genome.fa.s4205.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004205.1 Hibiscus syriacus cultivar Beakdansim tig00009205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58528

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2528--2565	19	2.0	19	94	0	67	34	0	13	52	1.40
2502--2716	77	2.8	75	86	5	254	28	1	11	58	1.42
5692--5780	31	2.9	30	83	6	115	20	26	26	25	1.99
11869--12128	96	2.7	96	89	3	389	40	19	13	26	1.88
14368--14437	19	3.3	19	68	24	59	22	24	11	41	1.87
14349--14512	45	3.6	45	95	0	292	20	21	11	45	1.83
21099--21217	45	2.6	45	93	0	202	20	22	11	45	1.83
21734--21773	19	2.1	19	85	0	53	50	12	15	22	1.77
22012--22049	19	2.0	19	94	0	67	50	10	13	26	1.73
22110--22207	42	2.4	42	82	1	126	30	23	21	24	1.99
21547--22268	276	2.6	272	82	3	898	35	17	15	31	1.91
22489--22527	21	1.9	21	89	5	62	38	5	17	38	1.72
28139--28427	42	7.0	40	85	7	248	21	19	22	36	1.95
28120--28378	63	4.1	61	86	7	292	21	18	22	37	1.94
28105--28424	105	3.1	105	94	0	554	21	18	23	36	1.95
28223--28420	63	3.1	63	87	5	269	20	19	21	37	1.94
29292--29696	42	9.7	42	90	1	620	36	23	19	20	1.95
29692--29744	21	2.5	21	90	0	79	16	20	30	32	1.95
39063--39145	2	41.5	2	100	0	166	50	0	0	49	1.00
39355--39427	28	2.7	28	93	4	123	31	9	4	54	1.51
52657--52685	2	14.5	2	100	0	58	51	0	0	48	1.00
53294--53727	134	3.3	130	78	9	425	32	18	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54397--54485	45	2.0	45	82	4	108	44	15	16	22	1.86
54491--55204	38	18.0	38	79	6	538	39	16	19	24	1.92
54491--55166	156	4.2	157	80	4	626	39	17	18	24	1.92
54960--55119	45	3.6	45	90	1	232	39	13	19	28	1.89
55912--56043	43	3.0	43	82	6	151	29	21	10	37	1.87

Tables:   1

The End!