genome.fa.s4206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004206.1 Hibiscus syriacus cultivar Beakdansim tig00009206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110008

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--84	41	2.0	41	97	2	155	45	4	34	14	1.67
2837--3203	38	10.2	36	74	12	147	41	3	9	44	1.54
2865--3057	72	2.6	75	82	10	216	41	3	10	44	1.57
3016--3194	36	5.2	33	83	12	195	42	3	8	45	1.53
2831--3226	37	11.2	33	75	18	220	42	3	9	44	1.54
3198--3273	29	2.6	28	84	13	93	36	3	13	46	1.61
3293--3366	31	2.5	29	82	6	87	17	8	0	74	1.05
4426--4463	5	7.6	5	82	11	51	23	0	0	76	0.79
4594--4618	12	2.1	12	100	0	50	40	8	0	52	1.31
7190--7384	99	2.0	97	90	2	309	33	15	19	31	1.93
8666--9435	85	9.1	85	87	0	1051	34	20	18	26	1.95
8666--9596	170	5.4	170	85	3	1141	34	20	17	26	1.95
9415--9453	16	2.4	16	95	0	69	43	20	5	30	1.73
9330--9536	101	2.0	101	90	1	326	36	21	15	27	1.93
9245--9596	186	1.9	186	89	1	553	34	21	16	27	1.95
9430--9596	85	2.0	85	86	0	235	33	22	16	28	1.95
10177--10475	37	7.9	37	75	14	200	43	3	9	43	1.53
10421--10462	23	1.9	22	85	9	59	52	4	4	38	1.44
10449--10489	13	3.0	14	85	7	57	46	4	2	46	1.37
10449--10559	31	3.7	30	80	11	120	41	3	9	45	1.53
10449--10573	31	4.1	31	77	15	102	40	4	10	45	1.57
10595--10659	23	2.9	21	75	24	62	13	7	1	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11619--11661	19	2.3	19	84	8	61	16	16	0	67	1.24
12505--12550	21	2.1	21	84	4	56	54	2	8	34	1.43
13442--13499	30	1.9	30	85	0	80	15	29	18	36	1.92
19254--19293	6	6.7	6	88	0	62	50	2	0	47	1.14
21293--21351	31	1.9	31	89	0	91	32	13	8	45	1.74
23308--23336	2	14.5	2	100	0	58	51	0	0	48	1.00
23175--23592	158	2.6	159	80	10	447	44	7	7	40	1.62
23653--23684	4	8.2	4	93	6	57	78	0	0	21	0.76
24996--25077	39	2.1	39	86	4	112	17	25	9	47	1.78
25111--25472	73	5.0	73	94	1	604	37	13	17	31	1.89
26190--26251	22	2.9	22	88	4	92	41	11	11	35	1.77
26619--26780	54	3.0	53	84	7	218	27	19	15	37	1.92
30135--30165	8	3.8	8	95	4	53	3	19	0	77	0.90
34231--34294	25	2.5	26	83	16	73	67	0	3	29	1.06
34228--34287	23	2.5	24	78	17	72	66	0	5	28	1.12
34288--34324	2	18.5	2	100	0	74	51	0	0	48	1.00
34824--34857	2	17.5	2	93	6	61	50	0	0	50	1.00
34877--35276	157	2.6	152	79	9	389	44	6	6	42	1.56
35330--35372	8	5.7	7	91	2	50	76	2	0	20	0.89
35338--35372	4	9.0	4	93	6	63	77	0	0	22	0.78
49229--49266	18	2.1	18	90	0	58	2	13	34	50	1.55
49213--49260	15	3.2	15	75	0	51	4	14	35	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51942--51973	2	16.0	2	100	0	64	50	0	0	50	1.00
55032--55097	31	2.2	28	84	12	80	60	6	10	22	1.51
55103--55129	4	6.8	4	100	0	54	77	0	0	22	0.76
55352--55606	100	2.5	102	80	8	266	40	16	18	24	1.91
55655--55711	29	2.0	29	82	0	69	50	5	15	28	1.65
56384--56415	12	2.7	12	95	0	55	68	9	12	9	1.39
56589--56627	3	13.0	3	88	0	60	61	0	2	35	1.10
56807--57245	134	3.3	134	83	4	542	28	16	23	32	1.96
58974--59002	13	2.2	13	100	0	58	24	27	6	41	1.80
60373--60465	42	2.2	41	84	3	114	35	21	17	25	1.95
60204--61366	233	5.0	233	86	1	1559	34	17	15	32	1.91
60843--60935	20	4.5	20	69	12	62	37	19	18	24	1.94
60204--61365	465	2.5	462	87	3	1607	34	17	15	32	1.91
60917--61781	423	2.0	424	86	2	1191	33	16	15	34	1.90
60678--61990	656	2.0	651	87	1	1878	34	16	15	33	1.91
61333--61990	233	2.8	233	85	2	828	34	16	15	33	1.90
72326--72608	108	2.6	108	84	7	342	41	15	18	24	1.89
78371--78403	12	2.8	12	95	0	57	27	39	0	33	1.57
91827--91905	24	3.1	24	75	13	61	50	15	3	30	1.61
93442--93489	22	2.2	23	82	14	57	47	22	2	27	1.62
94443--94500	2	29.0	2	100	0	116	50	0	0	50	1.00
94778--95083	159	2.0	154	85	7	420	48	7	16	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94779--95144	156	2.3	156	82	6	411	47	7	17	27	1.74
96147--96183	2	18.5	2	100	0	74	51	0	0	48	1.00
109131--109166	17	2.1	18	89	5	56	63	0	0	36	0.94
109347--109394	19	2.5	19	100	0	96	18	20	18	41	1.90
109481--109523	5	8.6	5	92	7	70	23	58	18	0	1.40
109481--109523	14	2.9	15	93	6	70	23	58	18	0	1.40
109521--109550	5	6.0	5	100	0	60	40	20	40	0	1.52
109871--109963	38	2.5	39	92	5	156	33	18	20	27	1.96

Tables:   1

The End!