genome.fa.s4207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004207.1 Hibiscus syriacus cultivar Beakdansim tig00009212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68940

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7420--7614	20	9.6	20	75	4	149	37	25	18	17	1.93
7420--7614	81	2.4	81	84	3	250	37	25	18	17	1.93
7420--7611	40	4.7	41	83	8	223	38	25	18	18	1.93
7420--7613	61	3.2	59	76	7	178	37	25	19	18	1.93
8174--8249	20	3.8	20	85	5	93	51	18	18	11	1.76
8281--8417	20	7.6	19	69	18	96	14	21	16	46	1.83
8281--8368	33	2.7	33	87	0	131	14	20	18	46	1.84
8341--8388	19	2.5	19	82	3	60	14	22	22	39	1.91
8341--8417	40	1.9	39	89	2	118	14	23	16	45	1.84
10377--10465	42	2.1	42	78	0	97	20	38	16	24	1.93
11848--11883	14	2.6	14	95	0	63	33	0	22	44	1.53
11990--12048	19	3.4	19	71	22	65	45	18	20	15	1.85
11990--12083	33	2.8	32	85	3	116	47	22	17	12	1.81
12022--12098	19	4.3	19	77	15	83	48	24	12	14	1.79
12098--12254	33	4.8	33	90	2	239	13	23	17	45	1.84
12130--12308	19	10.4	19	65	23	119	14	22	17	45	1.85
12098--12254	66	2.4	66	94	3	275	13	23	17	45	1.84
12241--12341	34	3.0	34	83	2	141	17	22	18	40	1.91
14856--14909	24	2.2	24	93	0	90	40	20	18	20	1.91
14856--14923	24	2.8	24	84	0	64	38	20	17	23	1.93
15692--15736	18	2.5	18	100	0	90	40	11	20	28	1.86
15789--16080	20	14.5	20	76	11	222	19	18	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15789--16080	40	7.2	40	82	6	261	19	18	22	38	1.93
15830--16080	40	6.2	40	84	4	290	20	18	22	38	1.94
17896--17944	17	2.9	17	87	0	80	36	4	6	53	1.45
19257--19309	21	2.5	21	82	14	65	30	11	32	26	1.91
19378--19423	21	2.2	21	84	7	58	21	30	15	32	1.94
26004--26065	24	2.6	24	86	0	88	12	11	22	53	1.71
27570--27644	10	7.7	10	68	21	52	9	10	21	58	1.59
27576--27640	16	4.1	16	91	0	112	7	10	23	58	1.57
27710--27741	16	2.0	16	100	0	64	6	12	25	56	1.59
32094--32168	37	2.0	37	94	0	132	32	16	16	36	1.90
58051--58115	30	2.2	30	86	5	87	52	10	0	36	1.37
58148--58190	20	2.2	20	91	0	68	41	9	4	44	1.57
58158--58261	29	3.3	30	79	14	111	44	12	0	42	1.49
58170--58272	29	3.2	31	79	14	111	46	11	0	40	1.47
62165--62210	21	2.2	21	84	3	58	21	8	30	39	1.84
62207--62291	23	3.8	23	80	16	115	21	16	28	34	1.95
64363--64389	12	2.2	12	100	0	54	33	0	14	51	1.43
68457--68523	23	2.8	24	81	2	91	17	26	22	32	1.96
68457--68544	47	1.9	45	86	4	122	20	26	20	32	1.97
68512--68564	21	2.5	22	78	9	65	20	24	22	32	1.98

Tables:   1

The End!