genome.fa.s4208.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004208.1 Hibiscus syriacus cultivar Beakdansim tig00009213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95472

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
862--896	14	2.5	13	90	9	52	5	22	22	48	1.72
1090--1133	22	2.0	23	90	4	72	34	22	18	25	1.96
1943--2029	20	4.3	20	88	0	129	28	19	24	27	1.98
2013--2088	20	3.8	20	92	1	127	25	22	15	36	1.93
2003--2092	40	2.3	39	83	9	128	24	21	17	36	1.94
2093--2151	21	2.8	21	97	0	109	38	18	25	16	1.92
4488--4634	72	2.0	71	83	10	183	31	17	12	39	1.86
4532--4634	37	2.9	37	84	4	122	31	16	10	41	1.82
4973--5056	35	2.4	34	78	7	87	29	22	8	39	1.83
4998--5329	68	4.9	67	89	2	459	32	18	12	36	1.88
5434--5682	123	2.0	123	85	1	338	24	32	16	26	1.96
15395--15460	30	2.2	30	97	0	123	25	48	3	22	1.65
19463--19514	25	2.1	25	100	0	104	48	19	3	28	1.66
21010--21574	54	10.3	54	89	2	842	36	17	14	31	1.90
21019--21550	223	2.4	223	90	3	803	37	17	14	31	1.89
21063--21574	277	1.8	277	94	0	918	36	17	14	31	1.90
21920--22092	94	1.8	95	85	3	242	27	21	12	39	1.89
25025--25051	2	13.5	2	100	0	54	51	0	0	48	1.00
25989--26060	29	2.4	29	81	9	83	31	8	12	47	1.71
27685--27761	25	3.2	22	69	16	55	76	3	9	10	1.13
27870--27942	2	36.5	2	100	0	146	50	0	0	49	1.00
30564--30690	60	2.1	61	77	4	132	12	21	11	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37523--37587	23	2.9	23	83	2	87	30	29	20	20	1.97
38177--38322	55	2.7	54	81	4	177	30	22	17	28	1.97
44882--44977	47	2.0	47	93	0	165	35	21	10	32	1.88
46045--46089	22	2.0	22	95	0	81	17	20	35	26	1.95
46439--46644	53	3.9	53	88	0	304	21	26	21	30	1.99
47083--47190	20	5.1	21	64	19	64	31	20	21	26	1.98
47083--47204	42	2.9	40	87	3	154	31	19	22	27	1.98
47258--47462	42	4.7	42	71	14	162	29	22	20	27	1.99
47193--47547	135	2.7	133	88	3	497	29	21	18	30	1.97
51262--51624	59	6.2	59	83	2	410	37	11	22	29	1.89
51255--51624	118	3.1	117	84	5	460	37	11	21	29	1.89
51261--51691	177	2.4	175	81	9	473	37	11	22	29	1.89
51575--51744	60	2.8	60	89	1	252	34	12	21	31	1.91
51897--52425	44	12.0	44	90	0	770	40	6	18	34	1.78
57072--57421	59	5.9	58	76	9	246	36	11	23	28	1.89
57077--57381	118	2.6	118	81	6	332	36	10	23	29	1.89
57295--57469	60	2.9	60	87	2	235	36	12	21	29	1.91
59661--59709	19	2.7	17	84	9	53	26	20	28	24	1.99
60200--60374	60	2.9	60	88	2	244	36	12	21	30	1.90
60232--60420	60	3.2	60	85	6	199	37	12	21	29	1.90
60526--60865	44	8.0	44	86	8	443	39	7	19	34	1.79
60722--60789	32	2.1	32	94	0	118	44	5	19	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60754--60887	45	3.0	45	86	1	171	36	6	20	35	1.79
63555--63597	6	7.2	6	87	7	52	51	16	11	20	1.75
63555--63597	19	2.4	18	84	7	52	51	16	11	20	1.75
68047--68142	47	2.0	47	93	0	165	40	22	6	30	1.79
69209--69287	22	3.6	22	77	5	79	15	20	39	25	1.91
70826--70951	55	2.3	55	78	4	130	36	23	13	26	1.92
70859--71003	55	2.7	53	88	3	200	31	22	17	29	1.96
75775--75829	25	2.2	25	86	0	83	20	20	20	40	1.92
77586--77653	27	2.6	27	95	4	122	41	16	11	30	1.84
85178--85216	19	2.1	19	95	0	69	23	41	30	5	1.76
86525--86559	18	1.9	18	88	0	52	54	0	17	28	1.43
90291--90340	22	2.3	22	92	0	82	26	38	30	6	1.80
91693--91727	18	1.9	18	88	0	52	54	0	17	28	1.43
94168--94327	70	2.2	71	87	6	243	41	9	13	35	1.76
94313--94362	2	25.5	2	95	4	93	48	0	0	52	1.00

Tables:   1

The End!