genome.fa.s4209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004209.1 Hibiscus syriacus cultivar Beakdansim tig00009217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120020

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5083--5116	18	1.9	18	88	5	52	29	20	0	50	1.49
10442--10475	18	1.9	18	88	5	52	29	20	0	50	1.49
30068--30098	3	10.3	3	100	0	62	32	0	0	67	0.91
31515--31699	81	2.3	81	88	1	273	28	21	11	38	1.88
31563--31831	137	1.9	139	92	1	452	27	21	10	39	1.87
31706--31968	81	3.3	80	87	3	377	29	21	11	37	1.89
31515--31912	218	1.8	219	89	2	622	28	20	10	39	1.87
31962--32173	68	3.1	68	88	2	327	31	25	15	28	1.96
32397--32532	55	2.5	54	83	2	173	33	22	11	33	1.90
32911--33098	95	2.0	95	83	4	236	26	19	16	37	1.92
34065--34296	81	2.7	87	85	10	336	27	23	11	37	1.89
34368--34494	68	1.9	68	94	0	227	29	24	15	30	1.96
34256--34479	119	1.9	119	88	1	342	29	24	15	31	1.96
34719--34855	56	2.5	54	85	5	177	34	18	11	35	1.87
36868--36928	23	2.7	23	86	0	86	31	27	22	18	1.97
43817--43877	23	2.7	22	85	7	77	31	26	24	18	1.97
48450--48484	18	1.9	18	94	0	61	45	0	0	54	0.99
48442--48489	24	1.9	26	83	8	64	43	2	2	52	1.24
50006--50847	424	2.0	424	92	1	1420	30	17	17	33	1.94
52033--52098	21	3.0	21	80	4	69	39	15	16	28	1.89
52051--52101	21	2.4	21	90	0	75	41	15	15	27	1.88
52134--52204	21	3.5	21	84	3	83	32	15	21	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52568--52631	33	1.9	33	83	0	83	28	14	28	29	1.95
55401--55454	20	2.8	20	78	13	67	37	7	18	37	1.79
55557--55604	21	2.3	21	88	0	78	41	16	18	22	1.90
55469--55698	94	2.4	94	88	0	325	41	16	16	26	1.89
55651--55708	21	2.8	21	91	0	89	37	18	17	25	1.93
56070--56168	33	3.0	33	92	0	153	25	14	28	32	1.94
58249--58330	42	2.0	41	81	11	96	31	15	19	32	1.93
58238--58987	261	2.9	259	87	4	1044	33	16	15	34	1.90
59453--59508	20	2.8	20	94	0	94	25	23	21	30	1.99
59022--59800	256	3.1	253	78	8	663	31	16	16	35	1.91
60133--60766	133	4.8	133	81	2	708	30	21	17	29	1.96
60927--61018	3	30.7	3	95	4	168	31	0	0	68	0.90
62817--62881	29	2.2	30	78	13	73	20	3	12	64	1.40
63967--64008	17	2.5	17	85	11	52	45	2	4	47	1.36
64552--64899	190	1.8	190	90	1	556	38	4	10	45	1.59
68110--68463	190	1.9	191	88	2	543	38	4	10	46	1.59
69823--69931	52	2.1	52	98	0	209	42	15	3	38	1.65
71593--71699	47	2.3	47	83	1	126	33	12	8	45	1.71
73223--73284	29	2.2	29	83	8	76	54	1	3	40	1.26
73238--73292	28	2.0	28	85	7	76	52	1	1	43	1.22
76318--76370	23	2.4	21	82	14	63	62	13	5	18	1.50
86949--86977	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89954--90015	19	3.3	19	72	20	67	4	12	29	53	1.59
89958--90015	18	3.2	18	75	22	66	5	12	27	55	1.58
89986--90022	18	2.0	19	89	5	58	5	16	32	45	1.70
92797--93019	119	1.9	119	87	0	329	24	18	18	38	1.93
92970--93108	73	1.9	73	84	0	188	31	19	9	39	1.83
97203--97232	14	2.1	14	93	0	51	63	0	0	36	0.95
98070--98094	8	3.1	8	100	0	50	52	0	0	48	1.00
99076--99117	15	2.7	15	85	14	50	57	0	0	42	0.99
105249--105320	31	2.3	31	85	2	90	44	15	9	30	1.78
106351--106714	130	2.8	130	83	2	426	42	16	8	32	1.78
107580--107776	109	1.8	108	81	3	243	46	15	14	22	1.83
109187--109232	24	1.9	24	86	0	65	54	0	2	43	1.12
109196--109236	21	2.0	21	90	9	66	53	0	2	43	1.13
115085--115132	22	2.2	22	100	0	96	37	16	12	33	1.86
116217--116278	24	2.7	23	83	14	76	37	3	4	54	1.38
116229--116307	13	6.2	13	72	19	60	37	1	2	58	1.20
116259--116309	16	3.0	17	83	13	61	39	0	1	58	1.09
118196--118251	20	2.7	21	73	18	62	21	19	26	32	1.97
118726--118778	21	2.5	22	79	11	67	24	13	28	33	1.93

Tables:   1

The End!