genome.fa.s4210.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004210.1 Hibiscus syriacus cultivar Beakdansim tig00009220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116747

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5735--5934	24	8.3	23	71	10	100	19	22	20	38	1.94
5734--5850	49	2.4	48	80	9	139	18	21	20	39	1.93
10038--10099	21	3.0	21	95	0	106	20	27	22	29	1.99
10138--10207	35	2.0	35	88	8	106	30	20	24	25	1.99
10240--10310	36	1.9	37	86	8	101	26	19	29	23	1.98
27290--27342	2	26.0	2	88	3	79	50	3	0	45	1.19
28256--28292	17	2.1	19	85	10	51	51	16	5	27	1.66
28763--28881	32	3.7	32	87	2	150	35	17	16	30	1.93
30582--30619	14	2.7	14	88	8	51	65	2	5	26	1.27
30721--30759	14	2.8	14	84	0	51	46	10	0	43	1.37
38963--39025	28	2.3	26	89	5	90	39	22	22	15	1.92
49323--49370	18	2.7	18	93	0	87	12	20	47	18	1.81
49334--49395	31	2.0	31	83	0	79	17	20	43	17	1.88
56439--56504	29	2.3	29	84	2	80	45	24	6	24	1.75
56546--56588	18	2.4	18	88	0	59	18	18	46	16	1.84
59170--59314	64	2.3	64	81	4	168	28	22	19	29	1.98
61303--61343	21	2.0	21	85	0	55	53	7	9	29	1.60
64994--65073	23	3.6	23	76	6	92	23	23	25	27	2.00
67655--67799	64	2.3	64	85	4	195	28	23	19	28	1.98
67835--67882	19	2.5	19	100	0	96	20	33	20	25	1.97
71071--71167	46	2.1	46	90	0	149	17	24	24	32	1.97
71071--71172	23	4.4	23	82	0	114	16	23	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71128--71180	23	2.3	23	86	0	70	16	22	28	32	1.96
75331--75373	13	3.2	13	86	6	50	69	0	6	23	1.12
77058--77448	99	3.8	106	87	3	436	21	17	26	34	1.96
78636--78701	16	4.2	15	78	5	69	0	16	1	81	0.76
78636--78701	22	3.0	21	80	12	71	0	16	1	81	0.76
78646--78697	8	6.4	8	78	12	61	0	15	1	82	0.75
78636--78697	25	2.5	24	78	14	65	0	16	1	82	0.75
78670--78802	67	1.9	70	83	7	175	12	21	10	54	1.68
84575--85713	568	2.0	568	91	0	1857	24	22	19	33	1.97
89884--89926	13	3.2	13	86	6	50	69	0	6	23	1.12
91182--91264	2	42.0	2	89	2	123	53	1	0	45	1.08
91298--91361	33	1.9	33	83	0	83	21	17	18	42	1.89
91804--91844	21	2.0	21	90	0	64	2	34	14	48	1.57
94998--95208	41	5.2	41	83	2	246	35	15	18	29	1.92
94997--95208	80	2.6	82	84	2	266	35	15	18	29	1.92
98740--98811	35	2.0	36	97	2	137	22	20	25	31	1.98
99181--99219	2	19.5	2	100	0	78	48	0	0	51	1.00
107346--107384	20	2.0	20	89	0	60	33	10	23	33	1.88

Tables:   1

The End!