genome.fa.s4211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004211.1 Hibiscus syriacus cultivar Beakdansim tig00009221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51319

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242--286	18	2.6	18	83	13	58	60	8	6	24	1.51
3046--3167	31	3.9	31	78	9	131	30	20	18	30	1.97
7173--7328	64	2.4	65	81	5	158	33	19	17	28	1.95
8086--8212	31	4.1	31	75	13	125	30	18	18	32	1.95
8200--8271	30	2.4	30	90	0	108	25	20	22	31	1.98
10645--10696	20	2.5	21	93	6	97	30	19	23	26	1.98
11275--11319	17	2.6	17	83	10	56	57	11	6	24	1.57
14078--14117	20	2.0	21	95	5	73	27	20	20	32	1.97
15059--15115	23	2.4	24	82	5	71	33	1	3	61	1.23
15685--16069	183	2.1	183	92	2	643	45	8	3	42	1.50
16974--17007	18	1.9	18	94	5	61	58	5	0	35	1.22
17983--18039	21	2.7	21	80	19	66	29	1	1	66	1.12
17996--18049	25	2.3	23	80	6	63	27	1	1	68	1.10
25328--25356	2	14.5	2	100	0	58	51	0	0	48	1.00
26695--26795	39	2.6	38	86	9	125	47	5	0	45	1.33
26695--26795	38	2.6	39	84	9	127	47	5	0	45	1.33
26768--26824	29	2.0	29	89	0	87	43	5	5	45	1.49
26708--27046	142	2.4	141	79	11	338	43	5	3	46	1.44
26790--27163	37	10.2	37	77	12	328	43	5	4	46	1.49
26790--27163	74	5.1	72	84	9	415	43	5	4	46	1.49
27748--28457	165	4.3	165	87	2	971	26	20	23	29	1.99
27748--28457	329	2.2	329	86	2	978	26	20	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33727--33848	60	2.0	60	100	0	244	57	6	14	21	1.60
35038--35427	37	10.9	35	76	12	287	45	5	2	45	1.42
35038--35505	74	6.4	72	78	12	372	44	6	3	45	1.46
35108--35164	29	2.0	29	89	0	87	43	5	5	45	1.49
35130--35507	72	5.1	71	82	13	399	44	6	3	44	1.47
35130--35509	37	10.2	37	79	14	374	44	6	3	45	1.47
35493--35527	2	18.0	2	94	5	63	48	0	0	51	1.00
36351--36379	2	14.5	2	100	0	58	48	0	0	51	1.00
36876--36913	20	1.9	20	89	10	60	31	7	7	52	1.59
37194--37272	31	2.5	31	89	4	115	41	2	12	43	1.56
37212--37276	31	2.1	31	100	0	130	41	3	16	38	1.64
42311--42551	123	2.0	120	81	5	279	46	8	7	38	1.62
42640--42678	3	13.0	3	94	0	69	64	0	2	33	1.08
44327--44758	123	3.6	122	81	8	492	27	19	13	39	1.89
44567--44942	113	3.3	113	86	3	501	31	18	12	37	1.89
44852--45016	73	2.3	73	86	2	224	33	18	15	33	1.92
44737--45129	186	2.1	187	94	0	689	31	18	13	35	1.91
44922--45628	113	6.3	113	87	2	999	29	19	14	37	1.90
45114--45158	23	1.9	23	82	13	56	15	26	6	51	1.68
44623--45242	300	2.1	300	86	2	861	31	19	13	36	1.90
44923--45623	226	3.1	226	95	0	1249	29	19	13	37	1.90
45682--46003	73	4.4	73	86	3	414	30	19	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46629--46686	22	2.6	22	94	0	98	34	13	18	32	1.91

Tables:   1

The End!