genome.fa.s4212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004212.1 Hibiscus syriacus cultivar Beakdansim tig00009222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52349

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4794--4862	5	14.6	5	74	17	58	78	0	18	2	0.88
4795--4862	14	4.9	14	81	13	70	77	0	19	2	0.89
5994--6245	50	5.0	50	99	0	477	23	13	24	38	1.91
6961--7726	119	6.5	119	96	1	1340	35	15	20	28	1.93
7881--7959	3	26.7	3	89	2	124	32	1	0	65	1.00
8419--8444	6	4.3	6	100	0	52	50	15	34	0	1.45
16025--16465	55	8.1	55	81	8	471	30	23	17	28	1.97
16486--16599	37	3.1	37	96	0	210	20	22	18	38	1.93
17865--17938	35	2.1	35	80	9	80	8	13	0	78	0.96
17878--18031	55	2.8	54	78	17	151	9	14	0	75	1.03
17949--18031	21	3.7	22	77	16	73	10	14	0	74	1.07
17871--18026	34	4.6	34	70	23	105	8	14	0	76	1.02
17939--18045	34	3.2	34	72	13	91	12	16	0	71	1.15
17934--18056	57	2.1	58	81	10	137	12	16	0	71	1.14
33028--33062	17	2.1	16	89	5	52	54	0	2	42	1.15
33443--33584	2	73.0	2	64	20	52	48	2	4	43	1.39
33449--33484	15	2.4	15	95	0	63	50	5	2	41	1.40
33732--33918	61	3.1	58	81	9	182	42	5	8	43	1.58
33761--33879	35	3.5	32	70	19	82	42	5	8	42	1.59
33816--33929	2	57.0	2	71	13	74	45	4	4	45	1.43
33744--33929	6	30.7	6	71	13	78	43	4	7	44	1.54
33933--34023	21	4.3	20	71	16	67	38	6	7	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33948--34050	22	4.8	21	77	11	84	36	5	8	48	1.58
34032--34108	15	5.3	15	70	20	56	42	3	3	49	1.39
34215--34268	20	2.7	19	75	8	63	33	31	18	16	1.93
34324--34836	20	25.5	20	76	10	314	35	24	18	21	1.95
34324--34535	41	5.2	41	90	1	320	38	24	17	18	1.93
35440--35527	20	4.4	21	85	5	121	36	25	20	18	1.95
35533--35577	19	2.4	19	100	0	90	46	17	20	15	1.84
35580--35675	33	2.8	33	85	3	120	13	21	20	43	1.86
35775--35811	14	2.6	14	86	0	56	48	21	0	29	1.50
37684--37732	20	2.5	20	86	0	71	34	24	20	20	1.96
37765--37808	19	2.3	19	92	0	70	11	15	29	43	1.82
37780--37871	33	2.8	33	90	3	143	8	22	23	44	1.81
37794--37871	14	4.8	17	75	21	78	8	24	21	44	1.81
37959--38327	94	4.1	94	89	5	530	46	18	12	22	1.82
38171--38327	82	1.9	82	97	0	296	43	17	14	24	1.86
40004--40060	20	2.9	19	82	17	64	38	21	22	17	1.93
40017--40074	19	3.0	19	85	7	64	41	20	20	17	1.90
40097--40172	20	3.8	20	82	1	89	13	17	17	52	1.74
40703--40919	20	10.7	20	79	6	231	18	18	24	37	1.94
40705--40957	41	6.2	41	87	2	343	18	18	24	38	1.93
41218--41315	24	4.2	24	67	23	66	43	1	5	50	1.31
41357--41401	18	2.4	19	85	14	67	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42807--42860	23	2.3	24	93	3	92	46	9	1	42	1.46
42899--42953	22	2.4	24	87	9	87	43	0	0	56	0.99
47228--47281	25	2.2	25	100	0	108	46	11	27	14	1.79

Tables:   1

The End!