genome.fa.s4213.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004213.1 Hibiscus syriacus cultivar Beakdansim tig00009227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113822

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--557	199	2.8	198	79	5	604	33	13	14	37	1.86
3310--3350	17	2.3	18	95	4	75	39	19	0	41	1.52
6205--6838	54	11.7	54	80	6	640	28	16	19	36	1.93
13294--13963	54	12.4	54	82	1	768	28	16	18	36	1.93
18038--18096	31	1.9	31	92	0	100	42	5	8	44	1.57
18121--18747	22	28.5	22	88	1	875	47	10	0	41	1.38
22542--22622	40	2.0	40	100	0	162	29	14	25	29	1.95
30796--30836	20	2.0	20	90	0	64	19	24	2	53	1.57
31676--31754	2	39.5	2	100	0	158	50	0	0	49	1.00
31851--31896	14	3.3	14	84	6	58	67	2	4	26	1.21
31921--31959	13	2.9	13	88	3	51	66	2	10	20	1.33
31913--31979	33	2.0	33	94	5	118	67	2	8	20	1.32
31934--31978	19	2.4	19	82	10	56	71	2	8	17	1.23
32555--32598	12	3.7	13	82	14	51	75	4	6	13	1.17
33626--33869	131	1.9	131	94	0	434	30	18	21	29	1.97
33786--34141	43	8.2	43	84	4	439	29	21	21	26	1.99
33786--34079	85	3.5	84	90	2	462	30	21	22	25	1.99
34466--34544	22	3.6	22	98	0	149	36	13	16	32	1.88
34903--35066	54	3.0	54	85	0	211	27	20	13	38	1.90
35928--36103	75	2.3	75	87	3	248	28	24	16	30	1.96
36178--36227	24	2.1	24	88	0	73	24	12	24	40	1.88
40334--40379	21	2.1	22	92	4	76	69	8	6	15	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43605--43631	2	13.5	2	100	0	54	51	0	0	48	1.00
43699--43749	22	2.3	21	78	21	59	68	0	5	25	1.12
43789--43852	33	1.9	33	93	6	112	67	3	7	21	1.31
44438--44482	12	3.7	13	82	11	51	73	6	6	13	1.24
45539--45571	15	2.1	16	88	5	50	33	27	3	36	1.72
46493--46546	21	2.6	21	96	0	99	35	14	9	40	1.78
47423--47769	190	1.8	191	89	3	549	40	5	8	45	1.59
47388--47796	190	2.2	191	83	7	543	41	5	8	44	1.58
48311--48351	13	3.2	13	80	19	50	29	2	0	68	1.03
49258--49318	28	2.3	25	72	13	59	60	3	4	31	1.34
51142--51223	15	5.5	15	88	2	121	37	7	19	35	1.80
51142--51223	30	2.8	30	94	1	139	37	7	19	35	1.80
51137--51223	45	2.0	44	93	2	147	40	6	19	33	1.78
51206--51275	20	3.5	20	90	0	113	40	8	12	38	1.74
51441--51509	30	2.4	28	81	16	86	52	1	1	44	1.19
51499--51559	23	2.7	23	82	12	65	44	1	1	52	1.20
51552--51595	22	2.0	23	86	4	63	54	0	0	45	0.99
51556--51612	21	2.6	22	81	10	64	52	0	0	47	1.00
51801--51920	42	2.9	42	97	0	222	45	19	20	15	1.86
58194--58282	12	7.9	12	76	16	84	52	0	44	2	1.13
58188--58290	22	4.7	22	77	13	95	52	0	45	1	1.12
58188--58282	32	2.9	34	83	10	115	52	0	45	2	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58290--58347	19	3.2	18	76	9	55	41	1	0	56	1.09
58504--58546	3	13.7	3	85	9	59	34	2	2	60	1.22
60479--60519	22	1.9	21	95	5	73	34	0	9	56	1.32
66115--66166	3	16.3	3	84	15	61	32	0	0	67	0.91
66115--66166	16	3.4	16	78	21	67	32	0	0	67	0.91
66114--66164	10	5.2	10	86	13	79	31	0	0	68	0.90
66114--66178	19	3.4	18	85	10	76	32	0	1	66	1.01
66116--66174	13	4.6	13	82	15	61	32	0	1	66	1.02
66281--66352	25	2.9	25	93	2	119	38	19	15	26	1.91
68192--68235	22	2.0	22	81	0	52	27	4	15	52	1.63
69744--69805	32	2.0	32	96	3	117	14	14	9	61	1.57
71204--71281	26	3.2	25	66	22	67	25	23	8	42	1.83
72753--72797	24	1.9	24	90	4	74	40	8	4	46	1.55
73082--73131	4	13.2	4	83	12	70	52	22	0	26	1.48
73796--73892	35	2.8	35	81	4	117	36	18	13	31	1.90
74111--74349	67	3.7	65	84	5	286	28	12	13	46	1.79
75161--75404	46	5.6	44	71	14	148	26	29	19	25	1.99
75207--75404	46	4.5	45	72	16	173	25	28	19	25	1.99
75107--75434	129	2.5	129	93	1	532	26	30	19	23	1.98
75631--75677	3	15.3	3	83	16	53	31	0	0	68	0.90
75630--75685	20	3.0	18	80	20	62	30	0	1	67	1.01
75629--75677	17	2.7	18	84	15	73	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75791--75862	25	2.9	25	93	2	119	38	19	15	26	1.91
77697--77740	22	2.0	22	81	0	52	27	4	15	52	1.63
79499--79523	12	2.1	12	100	0	50	60	8	8	24	1.52
80571--80608	20	1.9	20	88	0	58	76	0	0	23	0.79
80623--81037	37	10.8	38	85	7	484	45	6	1	46	1.40
80623--81037	76	5.4	74	86	6	492	45	6	1	46	1.40
82564--82648	43	2.0	44	93	6	147	16	22	18	42	1.89
86155--86221	35	2.0	35	91	5	111	59	5	13	20	1.55
88972--89093	65	1.9	65	84	3	165	30	16	22	31	1.96
89324--89356	13	2.5	13	95	0	57	57	6	0	36	1.23
95549--95873	37	8.7	37	87	6	458	44	7	1	45	1.43
95549--95873	76	4.3	74	89	6	476	44	7	1	45	1.43
96667--96712	20	2.3	20	85	7	58	45	0	6	47	1.28
96675--96713	20	2.0	20	90	5	62	41	0	5	53	1.23
103802--103986	4	46.2	4	86	0	199	48	7	2	42	1.44
104065--104137	24	3.0	24	85	0	92	42	2	8	46	1.48
104050--104137	4	22.0	4	88	0	77	43	5	6	44	1.54
104646--104903	118	2.2	117	88	1	374	38	14	17	29	1.90
105383--105442	2	30.5	2	89	3	95	3	0	48	48	1.18
105686--105725	2	20.0	2	100	0	80	50	0	0	50	1.00
107879--107918	21	1.9	21	85	10	55	27	17	15	40	1.89
107573--108817	447	2.9	425	88	4	1737	31	14	13	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110351--110395	23	2.0	22	91	4	72	44	11	4	40	1.60
112545--112582	2	19.0	2	100	0	76	50	0	0	50	1.00
113297--113797	195	2.6	194	88	3	731	31	14	12	41	1.82

Tables:   1

The End!