genome.fa.s4215.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004215.1 Hibiscus syriacus cultivar Beakdansim tig00009232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64801

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3507--3573	23	2.9	23	80	4	64	55	1	2	40	1.24
3544--3613	20	3.6	19	83	7	95	52	0	4	42	1.20
5655--5815	83	2.0	82	94	1	286	36	21	14	27	1.93
8014--8085	29	2.4	30	79	2	83	45	9	15	29	1.78
10613--10649	18	2.1	18	100	0	74	43	5	24	27	1.76
11742--11792	25	2.0	25	85	11	68	52	7	7	31	1.59
25276--25326	21	2.4	21	74	6	59	21	23	19	35	1.96
25316--25368	21	2.5	21	96	0	97	35	18	24	20	1.95
25357--25471	20	5.7	20	78	6	106	33	25	18	22	1.96
25354--25491	41	3.4	41	83	2	179	36	23	17	22	1.95
25950--26008	20	3.0	20	87	0	73	15	18	22	44	1.87
27327--27374	18	2.7	18	93	0	87	27	45	12	14	1.81
27955--28045	19	5.3	18	70	24	81	48	23	17	10	1.79
27955--28045	33	2.8	33	96	0	164	48	23	17	10	1.79
27971--28029	14	3.9	14	74	20	55	50	25	15	8	1.71
28073--28118	20	2.3	20	92	0	74	15	23	26	34	1.94
28089--28144	20	2.8	20	88	0	76	23	16	28	32	1.96
28493--28563	21	3.3	21	71	9	63	25	40	15	18	1.89
28483--28575	43	2.2	42	88	1	141	22	41	15	20	1.89
29986--30024	14	2.8	14	84	0	51	35	0	17	46	1.49
30227--30302	20	3.8	20	92	0	125	13	23	23	39	1.90
30526--30618	20	4.7	20	88	5	116	27	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30764--30797	12	2.9	12	86	4	52	17	41	5	35	1.74
31353--31406	24	2.2	24	90	0	81	22	16	20	40	1.91
31581--31605	12	2.1	12	100	0	50	72	0	28	0	0.86
33933--34024	19	5.4	18	68	24	74	47	18	20	13	1.81
33933--34059	33	3.8	33	89	2	193	46	18	22	12	1.83
33933--34063	19	7.7	18	65	25	70	46	19	22	12	1.82
34074--34130	14	3.7	14	75	20	60	8	24	22	43	1.81
34069--34148	33	2.4	33	97	0	151	10	23	21	45	1.82
34088--34148	19	3.5	19	72	21	69	11	22	21	44	1.84
34255--34291	14	2.6	14	82	0	56	43	24	0	32	1.55
35642--35708	21	3.2	21	68	4	55	19	20	35	23	1.95
35982--36166	91	2.0	90	87	6	264	47	18	11	22	1.80
37862--37950	20	4.8	19	74	18	89	46	19	22	12	1.83
37951--38022	33	2.2	33	87	0	99	13	19	22	44	1.86
37962--38031	33	2.1	33	84	5	88	15	20	18	45	1.85
38593--38666	20	3.6	21	85	5	98	20	21	18	39	1.93
38663--38718	20	2.7	21	80	5	69	44	14	21	19	1.86
38656--38811	21	7.5	21	72	7	104	34	17	22	25	1.96
38573--38831	20	12.6	20	71	13	66	30	18	21	29	1.97
57034--57223	29	6.6	28	80	8	145	53	5	5	35	1.46
57149--57253	29	3.6	29	83	3	97	55	4	6	33	1.47
59107--59535	55	7.8	54	93	0	660	35	17	12	34	1.87

Tables:   1

The End!