genome.fa.s4216.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004216.1 Hibiscus syriacus cultivar Beakdansim tig00009236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66009

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159--1191	3	11.3	3	87	6	50	69	0	0	30	0.88
1160--1250	14	7.2	12	70	20	62	63	2	4	29	1.25
1160--1248	23	3.6	23	75	20	72	64	2	4	29	1.25
1159--1224	13	4.8	13	75	15	53	65	1	4	28	1.21
3037--3644	73	8.4	73	87	4	804	34	21	18	26	1.96
3092--3644	216	2.5	216	89	4	819	33	21	18	26	1.96
3089--3644	143	3.9	145	87	4	786	33	21	18	26	1.96
5630--6112	149	3.2	149	91	2	776	29	19	16	34	1.94
14229--14296	28	2.5	28	83	4	77	61	1	4	32	1.24
14215--14281	26	2.7	25	73	13	68	64	1	4	29	1.22
14805--15076	148	1.8	147	85	6	377	46	6	7	38	1.60
15138--15216	36	2.2	36	97	0	149	45	3	2	48	1.34
15215--15246	12	2.8	11	95	4	55	68	0	3	28	1.04
16888--16953	3	21.7	3	78	9	71	60	0	3	36	1.12
19030--19080	22	2.3	23	90	6	79	23	29	19	27	1.98
19717--19778	22	2.8	22	95	0	115	24	24	20	30	1.99
19758--19835	29	2.7	29	87	0	111	25	21	19	33	1.97
20504--20564	20	2.8	22	69	18	56	22	26	21	29	1.99
21396--21469	39	1.9	38	91	2	121	21	27	18	32	1.97
21889--22723	8	104.9	8	97	0	1174	22	3	27	45	1.70
33885--33974	46	1.9	47	90	2	146	27	10	23	38	1.87
43641--43679	18	2.3	17	91	8	62	74	5	12	7	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43625--43679	18	3.1	18	84	7	60	74	3	14	7	1.17
43648--43689	18	2.4	18	84	4	59	76	4	14	4	1.12
43641--43700	18	3.4	18	77	13	54	73	3	15	8	1.20
43691--43726	19	1.9	19	88	5	56	63	0	30	5	1.17
43691--43739	18	2.9	18	77	19	52	67	0	26	6	1.14
43692--43747	14	3.3	18	69	27	50	67	0	26	5	1.11
45066--45624	55	10.5	55	89	2	600	29	16	24	30	1.96
48849--48928	43	1.9	41	82	7	99	52	3	3	40	1.37
50354--50396	20	2.1	20	86	4	59	46	9	11	32	1.72
51165--51266	53	1.9	52	88	2	150	39	16	6	37	1.76
51325--51558	18	12.6	18	73	14	138	26	3	23	47	1.68
51325--51497	54	3.2	53	80	10	190	25	2	23	48	1.64
51425--51469	17	2.7	17	89	3	65	22	0	26	51	1.49
51329--51482	53	2.9	55	81	8	174	24	3	23	49	1.65
51573--52101	167	3.2	167	85	0	716	39	16	9	34	1.80
51573--52095	85	6.2	84	78	5	488	39	16	8	35	1.80
53443--53521	41	1.9	41	86	0	113	24	11	25	39	1.88
59280--59323	20	2.1	22	87	8	65	43	0	15	40	1.47
59315--59341	13	2.1	13	100	0	54	37	7	14	40	1.74
59295--59409	32	3.5	31	78	19	117	41	4	14	39	1.66
59304--59499	36	5.5	36	82	6	179	40	3	14	41	1.61
59507--59606	38	2.6	37	81	10	114	44	4	6	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59328--59607	36	7.7	35	73	14	115	42	3	11	42	1.56
61025--61058	5	6.8	5	93	0	50	14	0	5	79	0.91
64718--64781	24	2.7	24	80	0	83	34	25	18	21	1.96

Tables:   1

The End!