Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004217.1 Hibiscus syriacus cultivar Beakdansim tig00009237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66184

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
962--1007
5
9.0
5
83
4
56
71
2
4
21
1.14
5444--5550
41
2.6
41
82
5
126
29
20
24
25
1.99
20094--20177
6
14.0
6
100
0
168
16
0
33
50
1.46
35378--35485
45
2.4
46
87
7
150
27
21
19
31
1.97
36905--36960
3
18.7
3
100
0
112
33
0
0
66
0.92
43731--43761
14
2.2
14
100
0
62
19
48
22
9
1.78
47948--47975
14
2.0
14
100
0
56
50
0
0
50
1.00
52604--52656
22
2.5
21
84
6
63
41
7
5
45
1.56
52604--52646
22
2.0
22
90
0
68
41
4
6
46
1.51
52664--52739
13
5.5
13
77
10
62
39
2
5
52
1.38
52653--52774
16
8.0
16
70
21
59
42
4
4
47
1.46
52652--52745
11
9.0
11
68
23
51
41
4
4
50
1.41
52653--52751
9
12.2
8
68
21
55
41
3
5
50
1.39
52653--52768
13
8.3
14
69
19
55
42
4
5
48
1.45
52653--52751
2
49.0
2
68
20
55
41
3
5
50
1.39
52768--52834
36
1.9
33
85
8
89
44
4
8
41
1.56
52798--52854
22
2.7
21
84
7
80
43
1
5
49
1.35
52837--52936
11
9.6
11
69
10
59
45
2
3
50
1.28
52807--52942
20
6.6
21
68
21
67
42
1
5
50
1.33
52844--52897
21
2.5
22
77
14
60
44
3
3
48
1.38
52881--52936
17
3.1
17
82
7
58
44
0
3
51
1.18
52965--52993
14
2.0
15
93
6
51
55
0
6
37
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52913--52995
22
3.6
24
73
16
70
48
1
7
43
1.38
52994--53054
7
8.6
7
75
22
56
34
8
1
55
1.39
52975--53032
26
2.1
27
81
6
64
39
5
3
51
1.41
52986--53771
22
34.5
23
67
22
168
37
7
3
51
1.47
52984--53150
8
20.6
8
67
19
53
35
7
4
52
1.48
53095--53191
7
13.6
7
69
21
51
34
10
2
53
1.46
52984--53153
95
1.8
91
86
9
245
35
7
4
52
1.48
53114--53242
7
18.1
7
70
21
51
34
6
1
56
1.36
53211--53238
3
9.3
3
100
0
56
32
0
0
67
0.91
53457--53517
26
2.3
26
80
5
70
37
6
1
54
1.37
53422--53523
32
3.1
33
72
9
84
36
5
3
53
1.43
53572--53893
2
159.0
2
66
23
106
41
4
4
49
1.43
53750--53893
62
2.3
63
77
13
147
45
1
5
47
1.34
53859--53965
56
1.9
57
84
5
146
39
7
4
48
1.52
53971--54056
44
2.0
43
84
13
115
37
6
3
52
1.46
54083--54129
12
4.1
12
78
10
53
51
31
0
17
1.46
54109--54133
12
2.1
12
100
0
50
52
16
0
32
1.44
54695--54737
2
22.5
2
90
9
72
48
0
0
51
1.00
55177--55232
27
2.1
27
83
6
69
51
7
5
35
1.52
54180--55776
584
2.8
578
88
3
2371
33
11
6
47
1.66
55286--55324
20
2.0
20
84
0
51
46
0
5
48
1.24
55836--56269
37
11.9
36
75
17
317
43
2
7
46
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55839--56269
148
3.0
145
80
12
458
43
2
7
45
1.46
56228--56275
23
2.0
23
84
8
60
41
0
8
50
1.33
62150--62419
80
3.4
80
91
0
425
31
24
20
22
1.98
62668--62877
65
3.2
64
79
11
223
32
22
17
27
1.96
62687--62877
64
3.0
65
81
7
228
31
22
16
28
1.96
62717--62896
65
2.8
63
85
7
202
30
23
17
28
1.97

Tables:   1

The End!