Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004221.1 Hibiscus syriacus cultivar Beakdansim tig00009241_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71803
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:448 original size:21 final size:21
Alignment explanation
Indices: 409--448 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
399 ATTCATATTA
* *
409 TAATATTATTAATATTTATAT
1 TAATACTATTAATAGTTATAT
*
430 TAATACTATTAGTAGTTAT
1 TAATACTATTAATAGTTAT
449 TAATTAGTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.53
Consensus pattern (21 bp):
TAATACTATTAATAGTTATAT
Found at i:5137 original size:19 final size:19
Alignment explanation
Indices: 5113--5180 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
5103 TACATGGTAG
*
5113 TTCATTAAATCATGTTTAA
1 TTCATTAAAGCATGTTTAA
5132 TTCATTAAAGCATGTTTAA
1 TTCATTAAAGCATGTTTAA
* *
5151 TTCAAT-AAGCATG-TT-G
1 TTCATTAAAGCATGTTTAA
5167 TTCATTAAAGCATG
1 TTCATTAAAGCATG
5181 CATTTCATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
16 5 0.11
17 9 0.20
18 7 0.16
19 23 0.52
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (19 bp):
TTCATTAAAGCATGTTTAA
Found at i:5289 original size:18 final size:18
Alignment explanation
Indices: 5268--5317 Score: 75
Period size: 17 Copynumber: 2.8 Consensus size: 18
5258 CAATTCAGCA
5268 AGTTCATTAATCAAAACT
1 AGTTCATTAATCAAAACT
*
5286 AGTTCATTAAT-TAAACT
1 AGTTCATTAATCAAAACT
*
5303 AGTGCATTAATCAAA
1 AGTTCATTAATCAAA
5318 TTAACTCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (18 bp):
AGTTCATTAATCAAAACT
Found at i:5303 original size:17 final size:17
Alignment explanation
Indices: 5232--5313 Score: 67
Period size: 17 Copynumber: 4.7 Consensus size: 17
5222 TTTATGCATT
*
5232 TAGTTCATTCAA-TAAGC
1 TAGTTCATT-AATTAAAC
* * *
5249 TACTTCATTCAATTCAGC
1 TAGTTCATT-AATTAAAC
* *
5267 AAGTTCATTAATCAAAAC
1 TAGTTCATTAAT-TAAAC
5285 TAGTTCATTAATTAAAC
1 TAGTTCATTAATTAAAC
*
5302 TAGTGCATTAAT
1 TAGTTCATTAAT
5314 CAAATTAACT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
17 29 0.55
18 24 0.45
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.37
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:9374 original size:22 final size:22
Alignment explanation
Indices: 9348--9400 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
9338 CATTGGCGTG
9348 GGAACAATTGAAGATGTATGAT
1 GGAACAATTGAAGATGTATGAT
9370 GGAACAATTGAAGATGTATGAT
1 GGAACAATTGAAGATGTATGAT
9392 GGAACAATT
1 GGAACAATT
9401 AAAGTTGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (22 bp):
GGAACAATTGAAGATGTATGAT
Found at i:12859 original size:2 final size:2
Alignment explanation
Indices: 12852--12877 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12842 TGTATTCATA
12852 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
12878 TAAAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16930 original size:15 final size:15
Alignment explanation
Indices: 16891--16930 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
16881 ATTGCAGAGG
16891 CAGCAGCAGCAACAA
1 CAGCAGCAGCAACAA
* * *
16906 CAACATCAGCAACAC
1 CAGCAGCAGCAACAA
16921 CAGCAGCAGC
1 CAGCAGCAGC
16931 GAAGGGAAGG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.38, G:0.17, T:0.03
Consensus pattern (15 bp):
CAGCAGCAGCAACAA
Found at i:22963 original size:16 final size:16
Alignment explanation
Indices: 22942--22973 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22932 CACCTTACTT
22942 CTGTTGAATATCAACC
1 CTGTTGAATATCAACC
22958 CTGTTGAATATCAACC
1 CTGTTGAATATCAACC
22974 TCTAACTTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (16 bp):
CTGTTGAATATCAACC
Found at i:45211 original size:29 final size:30
Alignment explanation
Indices: 45178--45236 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
45168 CGGCTATCAA
* *
45178 GAAAATAGCTTTATATGTTC-TTTAAAAAG
1 GAAAATAGCATTATATGTGCTTTTAAAAAG
45207 GAAAATAGCATTATATGTGCTTTTAAAAAG
1 GAAAATAGCATTATATGTGCTTTTAAAAAG
45237 AGATTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (30 bp):
GAAAATAGCATTATATGTGCTTTTAAAAAG
Found at i:51500 original size:15 final size:15
Alignment explanation
Indices: 51482--51516 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
51472 CGAGGGTATT
51482 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
51497 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
51512 GTAGT
1 GTAGT
51517 GGTTCTACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:57753 original size:20 final size:21
Alignment explanation
Indices: 57714--57753 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
57704 AGTATGTCCA
57714 GGGGGTATCGATTCCTCCCTG
1 GGGGGTATCGATTCCTCCCTG
57735 GGGGGTATCGATTCC-CCCT
1 GGGGGTATCGATTCCTCCCT
57754 AAAGGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.10, C:0.30, G:0.33, T:0.28
Consensus pattern (21 bp):
GGGGGTATCGATTCCTCCCTG
Found at i:58397 original size:15 final size:15
Alignment explanation
Indices: 58379--58428 Score: 100
Period size: 15 Copynumber: 3.3 Consensus size: 15
58369 CGAGGGTATT
58379 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
58394 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
58409 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
58424 GTAGT
1 GTAGT
58429 GGTTCTACGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:60572 original size:95 final size:95
Alignment explanation
Indices: 60370--60630 Score: 346
Period size: 95 Copynumber: 2.7 Consensus size: 95
60360 AACCACCTGG
*** * *
60370 ATCCATAAAGCTGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAATATCATTGTATAG-AT
1 ATCCATAAAGCCAAGGCGTTTAACCAATTGCTCTAGAGGGACAACTC-AT-GC-TT-TATTGTAT
* **
60434 ATTATAATCGCCTTTATCAGGGTAGCTGAATATT
62 ATTATAATCACCTTTATCAGACTAGCTGAATATT
*
60468 ATCCATAAAGCCAAGGTGTTTAACCAATTGCTCTAGAGGGACAACTCATGCTTTATTGTATATTA
1 ATCCATAAAGCCAAGGCGTTTAACCAATTGCTCTAGAGGGACAACTCATGCTTTATTGTATATTA
*
60533 TAATCACCTTTATCAGACTAGCTGAATCTT
66 TAATCACCTTTATCAGACTAGCTGAATATT
** * *
60563 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACATCTCAAGCTTTATTGTATA-TA
1 ATCCATAAAGCCAAGGCGTTTAACCAATTGCTCTAGAGGGACAACTCATGCTTTATTGTATATTA
60627 TAAT
66 TAAT
60631 ATGGGTATAC
Statistics
Matches: 147, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
94 10 0.07
95 91 0.62
96 1 0.01
97 2 0.01
98 43 0.29
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (95 bp):
ATCCATAAAGCCAAGGCGTTTAACCAATTGCTCTAGAGGGACAACTCATGCTTTATTGTATATTA
TAATCACCTTTATCAGACTAGCTGAATATT
Found at i:60989 original size:26 final size:26
Alignment explanation
Indices: 60953--61011 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
60943 TCTGGGTAAG
60953 GTCAAAGTCCTTTGTTTTATTATCTT
1 GTCAAAGTCCTTTGTTTTATTATCTT
60979 GTCAAAGTCCTTTGTTTTATTATCTT
1 GTCAAAGTCCTTTGTTTTATTATCTT
61005 GTCAAAG
1 GTCAAAG
61012 ATCTGTAACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.49
Consensus pattern (26 bp):
GTCAAAGTCCTTTGTTTTATTATCTT
Found at i:64297 original size:21 final size:22
Alignment explanation
Indices: 64273--64315 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
64263 TAAATTTCAA
*
64273 AAATATAAAA-GAAAATATGTT
1 AAATATAAAAGGAAAAAATGTT
*
64294 AAATTTAAAAGGAAAAAATGTT
1 AAATATAAAAGGAAAAAATGTT
64316 TATGAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (22 bp):
AAATATAAAAGGAAAAAATGTT
Found at i:64311 original size:29 final size:29
Alignment explanation
Indices: 64252--64311 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
64242 GAAACAGAAG
* *
64252 AAGAAAAATGTTAAATTTCAAAAATATAA
1 AAGAAAAATGTTAAATTTCAAAAAGAAAA
*
64281 AAGAAAATATGTTAAATTT-AAAAGGAAAA
1 AAGAAAA-ATGTTAAATTTCAAAAAGAAAA
64310 AA
1 AA
64312 TGTTTATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.25
Consensus pattern (29 bp):
AAGAAAAATGTTAAATTTCAAAAAGAAAA
Found at i:64395 original size:23 final size:22
Alignment explanation
Indices: 64352--64419 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 22
64342 AAAAAGAAAA
* *
64352 AAAAAGTCGAAAAAGTTAAAAGG
1 AAAAAGTTGAAAAAG-AAAAAGG
*
64375 AAAAAGTTGAATAAAGAAAAATTGA
1 AAAAAGTTGAA-AAAGAAAAA--GG
64400 AAAAAGTT-AAAAA-AAAAAGG
1 AAAAAGTTGAAAAAGAAAAAGG
64420 TGGAGAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
20 1 0.03
22 5 0.13
23 17 0.45
24 6 0.16
25 9 0.24
ACGTcount: A:0.66, C:0.01, G:0.18, T:0.15
Consensus pattern (22 bp):
AAAAAGTTGAAAAAGAAAAAGG
Found at i:64517 original size:2 final size:2
Alignment explanation
Indices: 64510--64570 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
64500 ATAAACTAAA
64510 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64552 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
64571 AAATAAATAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:67134 original size:83 final size:83
Alignment explanation
Indices: 66634--67787 Score: 1237
Period size: 83 Copynumber: 13.8 Consensus size: 83
66624 TGACATGCTC
* * * * * * *
66634 TTGAGCTTAGTGAAATCGAACTCGAAGGTATTTGTTGACAGATAGA-CTTTCTCGCCTCGAGTTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATA-ACCCTTCTTGCCTTGAGTTA
*
66698 TGCTGCAGATTCGATGTGCCT
65 TGCTGCA-AAT-GATGTGCCT
* * * * *
66719 TTGAGTTGAGTGTAATCGAACTCGAAGGTCTTTCTTGACAGATAACTCTTCTCGCCTTGAGTTAT
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTAT
* * * * *
66784 GTTGTAAATTAAATATTCCT
66 GCTGCAAA-T-GATGTGCCT
* * * * * * * *
66804 TTTAGCTGAATGCAATCGAACTC-AGAGGTCTTTTGTTGACAGATAGCCCTTATCGCCTTGAGCT
1 TTGAGCTGAGTGTAATCGAACTCGA-AGGTC-TTTGTTGGCAGATAACCCTTCTTGCCTTGAGTT
* *
66868 ATGCTGTAAATTTGATGTTCCT
64 ATGCTGCAAA--TGATGTGCCT
* * * **
66890 TTGAGCTGAGTATAGTCGAACTCGAAGGTATTTTGTTGGCAGATAACCCTTCTCCCCTTGAGTTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGT-CTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTA
**
66955 TGCTATAAAT-ATTGTGCCT
65 TGCTGCAAATGA-TGTGCCT
* * * * *
66974 TTGAGCTGAGTGTAATCAAACTTGAAGGTCTTTTATTAGCAGATAGCCCTTCTTGCCTTGAGTTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTA
* *
67039 TTCTACAAATGATGTGCCT
65 TGCTGCAAATGATGTGCCT
* * *
67058 TTAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAATCCTTCTAGCCTTGAGTTAT
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTAT
67123 GCTGCAAATGATGTGCCT
66 GCTGCAAATGATGTGCCT
* * **
67141 TTGAGCTTAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAGCCCTTCTTGCCTTGAACTAT
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTAT
*
67206 GCTAG-AAATGACGTGCCT
66 GCT-GCAAATGATGTGCCT
* * * * * *
67224 TTGATCTGAGTGTAATCGAAATCAAATGTCTTTGTTGGCAAATAACCCTTCTTGCCTTGAGCTAT
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTAT
* * *
67289 GTTGCAAAAGATATGCCT
66 GCTGCAAATGATGTGCCT
* * *
67307 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTTGCCTTGAGCTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTA
*
67372 TGCTGCAAATGATGTGTCT
65 TGCTGCAAATGATGTGCCT
* * *
67391 TTGAGCTGAGTGTAATTGAACTCGAAGGTTTTTGTTGGCAGATAACCCTTCTAGCCTTGAG-TAT
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTAT
* * ***
67455 ACTGTAAATGATACACCT
66 GCTGCAAATGATGTGCCT
* * *
67473 TTGAGCTGAGTGCAATCGAACTCGAAAGTCTTTTGTTGGCAGATAACCCTTTTTGCCTTGAGTTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTA
**
67538 TGCTGCAAATGACATGCCT
65 TGCTGCAAATGATGTGCCT
* * * * *
67557 TTGAGCTGAGTATAATTGAACTCGAAGGTC--T-TTGGAAGATAGCCCTTCTTGTCTTGA-TCTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGT-TA
*
67618 TGCTACAAATGATGTGCCT
65 TGCTGCAAATGATGTGCCT
* * *
67637 TTGAGCTGAGTGTAATCGAACTTGAAGGTCTTTGTTGGCATATAACCCTTCTAGCCTTGAGTTAT
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTAT
* * ** *
67702 GTTGTAAATGATACGTCT
66 GCTGCAAATGATGTGCCT
* * ** *
67720 TTGAGTTGAGTGTAATCGAACTCGAAGGTCTTGTGTTGGCAGATAGCCCTTCTCACCTTGAGCTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTT-TGTTGGCAGATAACCCTTCTTGCCTTGAGTTA
67785 TGC
65 TGC
67788 GACAAATAAA
Statistics
Matches: 900, Mismatches: 148, Indels: 43
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.00
80 67 0.07
81 1 0.00
82 43 0.05
83 338 0.38
84 253 0.28
85 91 0.10
86 103 0.11
87 3 0.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (83 bp):
TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGCCTTGAGTTAT
GCTGCAAATGATGTGCCT
Found at i:67337 original size:333 final size:333
Alignment explanation
Indices: 66634--67787 Score: 1342
Period size: 333 Copynumber: 3.5 Consensus size: 333
66624 TGACATGCTC
* * * * * * * * *
66634 TTGAGCTTAGTGAAATCGAACTCGAAGGT-ATTTGTTGACAGATAGACTTTCTCGCCTCGAGTTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTTGCCTTGAGTTA
* * * *
66698 TGCTGCAGATTCGATGTGCCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTTTCTTGACAGATA
66 TGCTGCA-AAT-GATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATA
* * * * * * *
66763 ACTCTTCTCGCCTTGAGTTATGTTGTAAATTAAATATTCCTTTTAGCTGAATGCAATCGAACTC-
129 ACCCTTCTAGCCTTGAGTTATGCTGTAAA-T-GATATACCTTTGAGCTGAGTGCAATCGAACTCG
* * * * *
66827 AGAGGTCTTTTGTTGACAGATAGCCCTTATCGCCTTGAGCTATGCTGTAAATTTGATGTTCCTTT
192 A-AGGTCTTTTGTTGGCAGATAGCCCTTATTGCCTTGAGCTATGCTGCAAA--TGACGTGCCTTT
* * * ** *
66892 GAGCTGAGTATAGTCGAACTCGAAGGTATTTTGTTGGCAGATAACCCTTCTCCCCTTGAGTTATG
254 GAGCTGAGTATAATCGAACTCGAAGGT-CTTTGTTGGCAAATAACCCTTCTTGCCTTGAGCTATG
*
66957 CT-ATAAATATTGTGCCT
318 CTCA-AAAGA-TGTGCCT
* * *
66974 TTGAGCTGAGTGTAATCAAACTTGAAGGTCTTTTATTAGCAGATAGCCCTTCTTGCCTTGAGTTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTTGCCTTGAGTTA
* * * *
67039 TTCTACAAATGATGTGCCTTTAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAAT
66 TGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAAC
* * * * *
67104 CCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTTAGTGTAATCGAACTCGAAGG
131 CCTTCTAGCCTTGAGTTATGCTGTAAATGATATACCTTTGAGCTGAGTGCAATCGAACTCGAAGG
* * *
67169 TC-TTTGTTGGCAGATAGCCCTTCTTGCCTTGAACTATGCTAG-AAATGACGTGCCTTTGATCTG
196 TCTTTTGTTGGCAGATAGCCCTTATTGCCTTGAGCTATGCT-GCAAATGACGTGCCTTTGAGCTG
* * * * *
67232 AGTGTAATCGAAATCAAATGTCTTTGTTGGCAAATAACCCTTCTTGCCTTGAGCTATGTTGCAAA
260 AGTATAATCGAACTCGAAGGTCTTTGTTGGCAAATAACCCTTCTTGCCTTGAGCTATGCT-CAAA
*
67297 AGATATGCCT
324 AGATGTGCCT
*
67307 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTTGCCTTGAGCTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTTGCCTTGAGTTA
* * *
67372 TGCTGCAAATGATGTGTCTTTGAGCTGAGTGTAATTGAACTCGAAGGTTTTTGTTGGCAGATAAC
66 TGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAAC
* * *
67437 CCTTCTAGCCTTGAG-TATACTGTAAATGATACACCTTTGAGCTGAGTGCAATCGAACTCGAAAG
131 CCTTCTAGCCTTGAGTTATGCTGTAAATGATATACCTTTGAGCTGAGTGCAATCGAACTCGAAGG
* * * *
67501 TCTTTTGTTGGCAGATAACCCTTTTTGCCTTGAGTTATGCTGCAAATGACATGCCTTTGAGCTGA
196 TCTTTTGTTGGCAGATAGCCCTTATTGCCTTGAGCTATGCTGCAAATGACGTGCCTTTGAGCTGA
* * * *
67566 GTATAATTGAACTCGAAGGTC--T-TTGG-AAGATAGCCCTTCTTGTCTTGATCTATGCTACAAA
261 GTATAATCGAACTCGAAGGTCTTTGTTGGCAA-ATAACCCTTCTTGCCTTGAGCTATGCT-CAAA
*
67627 TGATGTGCCT
324 AGATGTGCCT
* * * * *
67637 TTGAGCTGAGTGTAATCGAACTTGAAGGTC-TTTGTTGGCATATAACCCTTCTAGCCTTGAGTTA
1 TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTTGCCTTGAGTTA
* * ** * * *
67701 TGTTGTAAATGATACGTCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTTGTGTTGGCAGATAG
66 TGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT-TGTTGGCAGATAA
*
67766 CCCTTCTCA-CCTTGAGCTATGC
130 CCCTTCT-AGCCTTGAGTTATGC
67788 GACAAATAAA
Statistics
Matches: 700, Mismatches: 103, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
329 75 0.11
330 94 0.13
331 6 0.01
332 44 0.06
333 243 0.35
334 35 0.05
335 1 0.00
336 37 0.05
337 31 0.04
338 2 0.00
339 73 0.10
340 27 0.04
341 32 0.05
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (333 bp):
TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTTGCCTTGAGTTA
TGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGGCAGATAAC
CCTTCTAGCCTTGAGTTATGCTGTAAATGATATACCTTTGAGCTGAGTGCAATCGAACTCGAAGG
TCTTTTGTTGGCAGATAGCCCTTATTGCCTTGAGCTATGCTGCAAATGACGTGCCTTTGAGCTGA
GTATAATCGAACTCGAAGGTCTTTGTTGGCAAATAACCCTTCTTGCCTTGAGCTATGCTCAAAAG
ATGTGCCT
Done.