genome.fa.s4222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004222.1 Hibiscus syriacus cultivar Beakdansim tig00009242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72523

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4577--4613	20	1.9	19	89	10	58	24	18	5	51	1.67
7926--8003	31	2.5	31	83	2	104	42	8	5	43	1.58
9345--9372	14	2.0	14	100	0	56	21	42	28	7	1.79
9375--9463	33	2.7	33	89	0	133	25	26	37	10	1.88
9510--9541	13	2.5	13	94	0	55	6	25	43	25	1.77
20182--20331	69	2.2	69	85	4	196	28	12	12	47	1.77
25302--25749	228	2.0	227	94	1	781	45	8	7	39	1.61
25815--25860	20	2.3	19	89	10	74	54	10	17	17	1.70
25981--26027	20	2.4	19	79	10	58	55	8	17	19	1.67
28324--28389	33	2.0	33	87	0	96	28	1	45	24	1.62
30188--30227	19	2.2	19	90	4	64	30	2	10	57	1.45
30310--31726	199	7.1	199	97	1	2594	37	14	14	32	1.88
30310--31726	396	3.6	397	96	1	2610	37	14	14	32	1.88
30310--31726	595	2.4	594	97	0	2658	37	14	14	32	1.88
33188--33285	6	16.3	6	80	0	70	36	6	34	22	1.79
33203--33289	3	29.0	3	77	0	84	35	4	34	25	1.77
33191--33281	42	2.2	42	89	0	137	35	6	35	23	1.81
33191--33289	12	8.2	12	83	0	81	35	6	34	24	1.80
33188--33285	18	5.4	18	78	0	88	36	6	34	22	1.79
33520--34554	365	2.8	368	97	1	1972	35	14	15	34	1.89
33520--34554	183	5.7	184	98	0	1963	35	14	15	34	1.89
37104--37165	22	2.8	22	90	2	88	37	6	19	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37104--37175	23	3.2	22	88	4	90	36	5	19	38	1.75
37320--37386	30	2.2	30	82	10	75	52	4	0	43	1.21
37532--37594	23	2.7	23	90	0	90	36	6	19	38	1.77
37532--37604	23	3.2	23	86	3	85	35	5	19	39	1.75
37007--38020	426	2.4	428	98	1	1952	40	8	13	38	1.74
37958--38022	23	2.8	23	90	0	94	35	7	18	38	1.80
38226--38262	18	2.1	18	89	0	56	32	5	10	51	1.60
38218--38264	24	2.0	24	86	0	67	34	4	14	46	1.64
40260--40366	53	2.0	53	92	0	178	35	3	15	44	1.65
47317--47366	15	3.4	15	77	5	57	42	8	14	36	1.74
47523--47638	49	2.4	50	78	10	116	49	1	0	49	1.11
47600--47662	29	2.1	29	82	8	72	46	0	4	49	1.23
47709--47771	23	2.7	23	80	5	63	46	0	1	52	1.10
47812--47903	24	3.8	24	72	17	75	51	1	1	46	1.15
47861--47919	31	1.9	32	86	13	88	54	0	0	45	0.99
47868--47911	22	2.0	23	86	4	63	54	0	0	45	0.99
54398--54473	33	2.3	33	88	6	118	44	31	9	14	1.76
55014--55055	22	2.0	21	85	4	57	66	9	0	23	1.21
57845--57873	12	2.4	12	100	0	58	34	58	0	6	1.25

Tables:   1

The End!