Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004223.1 Hibiscus syriacus cultivar Beakdansim tig00009245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81785

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
283--386
29
3.6
29
86
2
156
18
25
36
19
1.94
1666--1734
26
2.8
25
79
14
63
52
5
1
40
1.34
2490--2666
49
3.4
49
83
15
241
41
0
12
45
1.43
2588--2614
10
2.7
10
100
0
54
40
0
18
40
1.51
2398--2865
168
2.8
174
89
5
712
41
0
12
45
1.42
2636--2854
25
8.9
25
67
22
99
41
0
13
45
1.44
2528--2865
116
2.9
118
88
7
494
41
0
13
45
1.43
2650--2836
56
3.6
50
80
14
193
42
0
12
45
1.41
2696--2854
14
11.6
14
70
22
63
40
0
13
45
1.44
4947--4980
15
2.2
16
94
5
61
55
5
0
38
1.24
5033--5132
30
3.4
30
87
4
132
45
14
0
41
1.44
5502--5555
27
2.0
27
100
0
108
40
25
14
18
1.89
5715--5810
29
3.4
28
84
2
75
16
23
44
14
1.85
5736--5818
29
2.9
29
94
0
139
15
26
42
15
1.87
9722--9988
85
3.2
83
83
2
318
27
15
20
36
1.93
10379--10646
85
3.2
83
84
3
338
27
15
21
35
1.94
11613--11692
32
2.5
32
89
0
115
32
25
12
30
1.92
13632--13666
16
2.1
17
94
5
63
17
48
22
11
1.79
13629--13673
13
3.2
13
80
17
54
17
42
24
15
1.88
13689--13811
30
4.2
30
82
10
148
32
5
20
41
1.76
13864--13903
10
3.8
10
93
6
62
22
27
20
30
1.98
20789--20937
29
5.2
29
82
8
162
32
5
20
41
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20789--20965
57
3.1
57
78
9
171
33
5
19
41
1.75
21704--21736
15
2.2
15
89
10
50
21
15
12
51
1.75
22418--22455
20
2.0
19
90
10
60
21
26
18
34
1.96
24308--24345
19
2.1
19
85
14
53
7
7
7
76
1.17
25172--25205
16
2.0
18
88
11
54
64
8
11
14
1.49
26333--26362
15
2.0
15
93
0
51
73
3
13
10
1.21
28364--28409
17
2.7
17
96
0
83
21
0
50
28
1.49
28416--28452
3
12.0
3
94
5
65
64
0
0
35
0.94
32171--32202
2
16.0
2
100
0
64
50
0
0
50
1.00
40183--40215
13
2.4
14
90
5
50
12
30
54
3
1.52
63347--63487
59
2.4
58
84
3
194
38
8
9
43
1.67
68287--68323
20
1.9
19
89
10
58
24
18
5
51
1.67
71637--71714
31
2.5
31
79
2
95
42
10
5
42
1.61
73051--73107
10
5.7
10
76
15
64
28
36
24
10
1.88
73050--73108
20
3.0
20
89
0
100
28
35
25
10
1.89
73085--73178
33
2.8
33
88
0
116
26
26
37
9
1.87
73231--73287
10
5.4
11
77
14
50
8
22
38
29
1.85

Tables:   1

The End!