Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004225.1 Hibiscus syriacus cultivar Beakdansim tig00009247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96538

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1778--2040
27
9.5
28
76
10
175
54
6
6
33
1.50
1778--2011
55
4.2
56
78
9
214
53
5
5
34
1.49
3844--4269
55
7.8
54
92
2
642
35
17
11
34
1.87
3844--4264
109
3.9
110
92
1
695
35
17
12
35
1.87
3844--4264
163
2.6
163
93
1
691
35
17
12
35
1.87
11996--12089
6
15.5
6
85
6
118
6
14
0
78
0.93
11996--12089
24
3.9
24
88
1
134
6
14
0
78
0.93
22661--22717
15
3.7
15
79
9
69
42
7
12
38
1.70
22665--22715
17
3.1
17
77
11
61
43
5
9
41
1.62
22887--22939
21
2.5
21
93
0
88
28
28
22
20
1.99
23135--23189
13
4.2
13
75
13
58
49
12
3
34
1.59
23175--23273
33
3.0
32
89
4
144
46
14
6
33
1.69
23268--23307
21
1.9
21
94
0
71
47
7
15
30
1.72
25598--25645
23
2.0
24
88
4
71
29
16
16
37
1.91
26940--27037
50
2.0
50
97
0
187
25
12
22
39
1.89
31793--31837
15
3.0
15
100
0
90
26
13
13
46
1.80
34628--34660
15
2.2
15
100
0
66
36
12
21
30
1.90
34778--34860
23
3.6
23
82
8
98
22
21
24
31
1.98
36750--36809
14
4.3
14
75
19
54
56
5
3
35
1.37
41671--41742
23
3.1
23
87
0
99
40
16
8
34
1.79
41734--41892
75
2.1
75
82
0
201
45
8
13
33
1.73
44521--44670
50
3.0
50
85
1
194
38
19
21
20
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44676--44714
19
2.1
19
90
0
60
38
23
10
28
1.87
44695--44959
45
5.9
45
87
2
338
34
18
20
26
1.96
44631--44759
64
2.0
64
86
3
179
38
19
17
24
1.93
44590--44807
109
2.0
112
85
6
300
37
18
18
25
1.93
44695--44959
135
2.0
135
90
3
426
34
18
20
26
1.96
50354--50400
24
2.0
23
88
8
69
29
2
6
61
1.32
50564--50602
20
2.0
20
84
0
51
23
7
23
46
1.78
50780--50831
20
2.5
20
84
9
59
25
23
34
17
1.96
50800--50839
20
2.0
20
95
0
71
27
20
32
20
1.97
66768--66812
17
2.8
17
83
12
60
24
0
2
73
0.95
66769--66813
22
2.0
22
86
0
63
22
0
2
75
0.91
75864--75941
26
3.1
26
75
3
79
17
19
0
62
1.32
81737--81818
6
13.7
6
77
0
74
35
6
41
17
1.74
81737--81818
12
6.8
12
78
0
92
35
6
41
17
1.74
82620--82687
31
2.2
31
83
0
91
20
4
19
55
1.59
83491--83529
16
2.4
16
86
4
51
61
7
12
17
1.54
83662--84183
83
6.4
82
85
3
597
29
19
17
33
1.94
84269--84313
8
5.6
8
86
0
54
42
24
4
28
1.74
87145--87206
31
2.0
31
81
6
72
22
11
11
54
1.67

Tables:   1

The End!