genome.fa.s4226.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004226.1 Hibiscus syriacus cultivar Beakdansim tig00009250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68460

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1717--2201	240	2.0	240	99	0	961	42	21	12	23	1.87
6282--6312	16	1.9	16	100	0	62	48	25	0	25	1.52
11181--11209	13	2.2	13	100	0	58	37	24	17	20	1.93
23259--23330	30	2.4	29	81	9	81	40	6	11	41	1.67
23995--24046	18	2.9	18	88	0	68	23	28	19	28	1.98
26101--26411	153	2.0	154	97	1	590	26	12	27	33	1.92
28105--28142	2	19.0	2	94	0	67	52	0	0	47	1.00
28107--28149	8	5.4	8	94	0	50	53	2	0	44	1.13
27944--28286	182	1.9	182	95	1	616	43	18	7	30	1.77
28935--28970	15	2.4	15	95	0	63	41	13	0	44	1.44
29129--29171	20	2.2	19	84	12	52	25	16	27	30	1.97
32357--32656	123	2.4	123	82	4	338	27	17	18	37	1.93
32370--32660	82	3.5	82	83	3	318	26	17	17	37	1.92
32343--32655	41	7.6	41	80	3	272	27	17	18	36	1.93
37754--37807	22	2.5	22	100	0	108	18	25	33	22	1.97
37735--37813	10	7.4	11	73	19	69	20	25	30	24	1.98
40066--40160	24	4.0	24	90	0	145	27	13	18	40	1.89
46737--46855	24	5.0	24	89	4	168	26	13	20	40	1.89
46719--46855	48	2.9	48	79	6	152	25	13	19	41	1.88
55681--55716	18	2.0	18	94	0	63	38	5	2	52	1.39
57081--57183	40	2.6	40	92	0	179	24	20	10	44	1.83
60875--61230	68	5.2	68	92	0	588	31	16	25	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61219--61858	81	7.9	81	86	0	877	36	12	21	29	1.90
62029--62077	2	24.5	2	95	0	89	2	0	46	51	1.12
63193--63472	97	3.0	97	81	8	294	42	8	3	44	1.53
63412--63574	82	2.0	81	84	1	209	46	4	5	44	1.46
63606--63665	9	6.8	9	81	11	79	51	0	1	46	1.10
63593--63646	28	1.9	28	92	0	90	46	1	1	50	1.23
63610--63662	16	3.1	17	86	10	72	50	0	1	47	1.12
65424--65454	10	3.1	10	95	0	53	3	9	54	32	1.49

Tables:   1

The End!