Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004227.1 Hibiscus syriacus cultivar Beakdansim tig00009256_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74930

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4003--4057
24
2.3
24
83
0
74
54
18
10
16
1.70
5156--5198
21
2.0
20
86
8
59
44
6
4
44
1.52
10711--10735
10
2.5
10
100
0
50
72
20
8
0
1.10
16241--16322
21
3.6
23
74
15
71
29
21
21
26
1.99
16241--16327
23
3.8
23
75
14
81
28
22
22
25
1.99
16502--16539
19
2.0
20
84
5
51
42
23
7
26
1.81
19065--19224
65
2.5
65
84
5
209
32
21
15
30
1.94
19444--19468
10
2.5
10
100
0
50
72
20
8
0
1.10
21617--21649
2
17.0
2
87
6
50
48
0
0
51
1.00
22862--22898
12
2.8
13
88
12
58
18
8
0
72
1.08
22981--23039
15
4.1
14
81
14
66
13
3
8
74
1.17
24118--24174
28
2.0
28
86
6
80
15
8
3
71
1.24
36403--37074
124
5.5
124
89
3
958
33
24
16
25
1.96
37683--37707
2
12.5
2
100
0
50
0
0
48
52
1.00
38846--38910
3
22.3
3
76
14
57
27
1
1
69
1.07
39001--39040
20
2.0
21
85
5
55
22
7
2
67
1.28
39092--39183
42
2.1
43
84
8
114
13
4
7
75
1.17
40202--40236
17
2.1
17
88
0
52
54
0
2
42
1.15
40424--40498
14
5.4
14
77
12
75
66
1
0
32
1.00
40699--40751
21
2.5
22
90
6
90
50
3
16
28
1.62
42152--42211
3
20.3
3
93
3
104
66
1
0
31
1.01
43117--43256
74
1.9
72
84
5
183
54
7
10
28
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43117--43287
74
2.3
72
80
11
179
56
6
9
28
1.56
43482--43523
21
2.0
21
100
0
84
57
4
4
33
1.41
58457--58525
18
3.8
18
86
0
93
26
50
10
13
1.72
61022--61123
24
4.2
24
73
0
87
21
13
15
49
1.79
64653--64698
17
2.6
17
79
3
56
30
19
8
41
1.82
66220--66258
20
1.9
21
85
15
55
69
0
28
2
1.02
69371--69405
18
1.9
18
88
0
52
54
0
17
28
1.43
70543--70629
24
3.7
24
85
1
113
22
20
19
36
1.95

Tables:   1

The End!