genome.fa.s4228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004228.1 Hibiscus syriacus cultivar Beakdansim tig00009257_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118163

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9049--9091	18	2.5	17	85	7	61	25	4	2	67	1.22
9698--9767	19	3.9	19	73	15	60	18	8	0	72	1.09
14178--14237	16	3.5	16	77	16	66	80	8	10	1	0.99
14188--14226	10	3.7	11	80	13	55	82	7	10	0	0.86
14174--14227	20	2.9	20	78	15	71	79	9	11	0	0.93
14183--14244	16	4.3	15	74	15	51	77	8	11	3	1.09
14183--14259	22	3.6	21	80	15	79	76	7	12	2	1.10
15804--15878	36	2.1	36	92	5	125	25	24	13	37	1.91
16742--17167	106	4.0	106	91	1	649	34	23	19	22	1.96
18422--18464	18	2.5	17	85	7	61	25	4	2	67	1.22
18938--19016	40	2.0	40	85	9	110	30	5	7	56	1.49
19083--19132	19	2.6	19	90	6	75	14	10	0	76	1.03
30539--31087	124	4.4	124	89	1	791	29	26	18	26	1.98
30948--31042	43	2.3	42	85	7	122	29	23	21	26	1.99
30959--31048	43	2.1	43	87	6	130	28	25	17	27	1.98
31284--31321	16	2.4	16	86	8	51	31	0	2	65	1.06
31807--31903	32	3.1	32	79	2	108	30	40	6	22	1.79
34218--34251	10	3.4	10	91	0	50	20	50	20	8	1.75
34208--34251	15	2.9	15	82	3	52	22	47	20	9	1.78
36157--36187	16	1.9	16	93	0	53	51	0	0	48	1.00
36212--36359	28	6.0	27	70	23	103	47	4	4	43	1.40
36296--36341	21	2.2	21	84	3	58	47	4	4	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36220--36359	27	5.6	27	70	22	87	47	4	3	44	1.40
38245--38274	13	2.2	14	94	5	53	40	0	0	60	0.97
39234--39273	20	2.0	20	90	5	62	0	25	0	75	0.81
49026--49050	11	2.3	11	100	0	50	56	0	28	16	1.41
49522--49559	13	2.9	13	96	0	67	31	2	21	44	1.66
51559--51611	21	2.5	21	93	0	88	20	9	13	56	1.64
54472--54518	23	2.0	24	83	4	60	27	21	27	23	1.99
65609--65955	113	3.1	110	66	15	251	32	22	18	26	1.97
65346--66320	223	4.4	222	79	5	885	31	21	18	28	1.97
66619--66749	22	5.5	22	73	20	97	44	5	9	41	1.59
66648--66722	26	2.8	26	83	4	96	44	8	9	38	1.66
66626--66748	26	5.2	22	72	19	81	43	5	9	40	1.61
69427--69486	22	2.8	22	70	12	52	36	13	11	38	1.81
69462--69535	24	3.1	23	76	12	69	31	8	16	44	1.76
71112--71169	30	2.0	29	86	3	80	44	8	17	29	1.78
73965--74107	48	3.0	48	95	3	252	37	7	14	39	1.75
73965--74089	24	5.2	24	66	8	83	37	8	13	40	1.74
73981--74106	24	5.2	24	67	10	87	38	6	15	39	1.73
76358--76390	17	1.9	17	93	0	57	30	0	0	69	0.88
76636--76767	28	4.7	27	72	7	95	43	7	7	41	1.61
77755--77829	10	7.7	10	69	21	61	9	12	21	57	1.62
77761--77825	16	4.1	16	95	0	121	7	12	23	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79360--79411	25	2.0	26	85	10	72	38	1	3	55	1.29
79369--79418	25	2.0	25	84	7	66	40	2	2	56	1.22
80364--80413	24	2.1	24	82	10	59	60	0	4	36	1.16
80585--80641	23	2.5	23	94	0	96	50	1	1	45	1.22
80599--80688	23	4.3	20	73	17	60	56	0	1	42	1.06
80655--80701	22	2.2	21	84	3	58	48	2	2	46	1.25
80659--80724	33	2.0	34	84	3	89	50	1	1	46	1.20
83307--83398	23	4.0	23	78	0	94	23	19	22	33	1.97
87884--89995	706	3.0	704	93	1	3632	33	14	21	29	1.94
91537--91569	15	2.2	15	94	0	57	30	9	15	45	1.77
91681--91774	23	4.1	23	74	0	80	23	19	24	32	1.97
92599--92642	21	2.1	21	95	0	79	61	6	4	27	1.41
92599--92647	21	2.4	20	89	3	71	61	10	4	24	1.45
92932--93070	74	1.9	75	85	7	194	32	10	6	51	1.61
94990--95032	9	4.6	9	85	8	50	74	9	2	13	1.16
94990--95032	19	2.3	19	87	0	59	74	9	2	13	1.16
94893--95108	115	1.9	115	86	3	310	48	7	4	39	1.53
97918--97943	2	13.0	2	100	0	52	50	0	0	50	1.00
98606--98668	2	31.5	2	90	6	101	49	0	1	49	1.10
99078--99132	24	2.5	21	77	19	58	61	3	20	14	1.47
99079--99132	22	2.4	21	82	11	63	62	3	18	14	1.46
100050--100074	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104206--104414	99	2.1	98	90	3	330	35	15	16	32	1.90
106031--106315	87	3.4	87	84	5	365	34	19	21	24	1.96
107060--107140	10	7.5	11	76	15	64	41	1	4	51	1.31
107093--107135	2	21.5	2	90	9	70	46	0	2	51	1.13
111340--111380	2	20.5	2	100	0	82	48	0	0	51	1.00
111433--111480	24	1.9	25	91	8	80	25	0	22	52	1.48
111746--111790	19	2.3	19	84	7	54	22	2	0	75	0.91
114401--114600	95	2.1	94	86	2	276	34	15	20	30	1.94
115465--116170	85	8.4	85	83	6	841	36	21	17	24	1.94
116203--116730	85	6.3	85	82	4	514	34	23	16	25	1.95
116203--116730	171	3.1	170	83	3	602	34	23	16	25	1.95

Tables:   1

The End!