genome.fa.s4229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004229.1 Hibiscus syriacus cultivar Beakdansim tig00009259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69963

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5582--5639	17	3.4	17	71	21	57	20	13	5	60	1.53
5582--5652	35	2.0	35	94	0	124	22	16	4	56	1.58
6883--6981	49	2.0	49	94	0	171	24	18	9	48	1.76
7439--7638	107	1.9	107	89	5	314	37	26	12	24	1.91
8235--8295	2	31.5	2	91	6	99	52	1	0	45	1.10
8284--8573	32	8.2	32	78	17	244	43	3	8	44	1.51
8282--8595	72	4.4	69	81	12	325	43	2	8	44	1.49
8406--8529	11	10.8	11	64	23	51	43	1	9	45	1.46
8558--8600	23	2.0	21	86	9	59	44	0	4	51	1.22
15135--15667	139	3.8	139	88	1	728	25	20	17	37	1.94
15939--16357	73	5.7	72	84	3	498	35	12	21	31	1.90
15952--16357	148	2.8	144	85	4	544	35	12	20	31	1.90
16382--16755	145	2.6	145	90	0	570	31	15	26	27	1.96
16715--16845	42	3.1	42	81	3	122	30	23	19	25	1.98
16722--16796	20	3.7	20	71	3	60	28	21	25	25	1.99
16733--16845	42	2.7	42	83	4	131	30	22	19	27	1.98
16883--17214	53	6.2	54	83	3	406	42	18	9	29	1.81
16883--17214	159	2.1	160	87	5	467	42	18	9	29	1.81
16937--17327	159	2.5	158	82	6	450	43	16	9	30	1.79
17254--17559	55	5.7	55	82	9	346	44	16	6	32	1.73
17218--17563	110	3.3	101	78	11	313	44	16	6	32	1.73
19121--19149	13	2.2	13	100	0	58	17	20	0	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19234--19313	7	11.1	7	76	18	58	2	18	0	78	0.86
19229--19371	9	15.2	9	72	19	73	2	13	3	79	0.97
19229--19384	21	7.2	20	73	21	93	3	14	3	78	1.00
19229--19371	28	5.0	27	70	17	101	2	13	3	79	0.97
19231--19296	7	9.4	7	83	6	89	1	16	0	81	0.76
24344--26869	4	631.8	4	92	0	3690	25	4	24	45	1.73
26879--27107	8	28.5	8	97	0	251	0	10	49	40	1.36
26874--27107	16	14.7	16	95	0	335	0	10	49	39	1.38
26883--27104	24	9.3	24	96	1	401	0	10	50	39	1.37
29204--29249	12	3.6	13	85	11	60	56	2	0	41	1.11
29202--29242	10	4.2	10	87	12	59	58	0	0	41	0.98
29202--29254	22	2.4	22	84	9	72	56	3	0	39	1.17
29608--30093	132	3.7	132	83	7	583	23	23	15	37	1.93
29800--30041	44	5.6	43	71	11	170	22	23	15	38	1.92
29583--30083	264	1.9	264	84	4	670	23	23	14	37	1.93
30803--30854	22	2.4	22	86	0	68	44	9	9	36	1.70
37672--37713	2	21.0	2	100	0	84	50	0	0	50	1.00
39946--40011	6	10.5	6	80	9	51	1	60	0	37	1.06
39947--40008	12	4.9	12	81	11	61	1	61	0	37	1.06
39930--40007	27	2.9	27	84	3	95	1	62	0	35	1.03
39929--40011	33	2.5	33	90	0	121	1	62	0	36	1.03
44460--44507	24	2.0	24	100	0	96	29	20	12	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44567--44608	14	3.2	13	77	16	50	59	2	2	35	1.23
45703--45883	64	2.8	63	81	3	209	27	17	26	28	1.97
45831--45881	19	2.7	19	85	8	70	25	15	35	23	1.94
45724--45883	65	2.5	65	85	3	207	28	16	26	29	1.97
46100--46139	20	2.0	21	85	14	57	47	5	5	42	1.47
52349--52388	21	1.9	21	85	10	55	35	10	2	52	1.48
54314--54494	64	2.8	63	83	3	218	27	17	26	29	1.97
54442--54492	19	2.7	19	85	8	70	25	15	35	23	1.94
54335--54494	65	2.5	65	86	3	216	27	16	26	30	1.97
54336--54543	65	3.2	64	79	14	196	27	16	25	30	1.97
54711--54750	20	2.0	21	85	14	57	45	7	5	42	1.54
60130--60386	94	2.7	94	85	4	329	33	17	17	30	1.94
61338--62487	84	13.8	83	81	4	1208	34	22	18	24	1.96
61338--62487	329	3.5	329	82	5	1262	34	22	18	24	1.96
64518--64581	2	32.5	2	96	3	121	48	0	0	51	1.00
64686--64722	15	2.3	17	81	9	51	13	18	0	67	1.23
64672--64750	23	3.6	22	75	17	67	12	16	1	69	1.25
64776--64817	21	2.0	21	86	9	59	28	11	0	59	1.33
68034--68092	26	2.3	26	100	0	118	49	13	15	22	1.79
68413--68671	94	2.7	95	85	6	339	31	18	18	31	1.95

Tables:   1

The End!