genome.fa.s423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000423.1 Hibiscus syriacus cultivar Beakdansim tig00000774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69775

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3260--3340	42	1.9	43	87	2	119	25	14	23	35	1.93
2880--3996	254	4.5	253	80	10	1220	32	15	17	34	1.91
3496--3991	250	2.0	254	84	6	670	32	14	17	35	1.91
8499--8556	2	30.5	2	89	10	95	51	0	0	48	1.00
8442--8506	29	2.2	29	83	5	78	38	7	0	53	1.30
8499--8556	28	2.1	27	96	3	107	51	0	0	48	1.00
8586--8670	29	2.9	30	81	10	88	55	2	5	36	1.37
9026--9084	23	2.6	23	80	0	64	40	10	18	30	1.84
9191--9239	23	2.1	23	88	0	71	38	10	20	30	1.86
8892--9377	156	3.1	155	89	2	704	42	12	12	32	1.81
9446--9619	75	2.4	74	90	5	273	37	16	10	35	1.83
9775--10070	92	3.1	92	84	12	405	44	12	13	29	1.80
9700--10070	198	1.9	196	88	7	570	44	11	13	30	1.79
9959--10530	115	4.9	112	84	10	650	42	13	12	31	1.82
10472--10510	21	1.9	20	94	5	69	43	10	10	35	1.73
10093--10530	239	1.8	239	88	5	670	42	13	13	31	1.82
11524--11574	21	2.4	21	84	12	61	37	13	0	49	1.43
21618--21878	125	2.1	125	92	0	432	29	15	15	39	1.88
22177--22224	23	2.1	23	88	0	69	37	16	8	37	1.79
22177--22339	87	1.9	87	96	0	299	32	14	11	41	1.82
22261--22305	23	2.0	23	90	0	72	37	17	8	35	1.81
27391--27419	8	3.6	8	100	0	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28852--28880	7	4.3	7	91	8	51	27	0	0	72	0.85
36321--36434	40	2.8	39	82	4	138	36	21	12	29	1.90
38490--38602	42	2.7	42	91	0	172	18	13	15	53	1.73
38654--38690	18	2.1	18	89	0	56	45	16	10	27	1.80
38901--38991	28	3.4	27	78	16	91	45	1	2	51	1.20
38976--39037	23	2.6	23	84	5	70	51	4	3	40	1.39
39314--39352	20	2.0	20	84	0	51	33	17	7	41	1.79
39326--39398	30	2.5	30	93	2	130	31	19	6	42	1.77
39326--39398	15	4.9	15	79	3	94	31	19	6	42	1.77
44778--44831	26	2.0	28	82	13	69	53	0	1	44	1.11
44857--44903	21	2.2	21	85	7	60	19	10	4	65	1.39
44857--44902	22	2.1	21	84	11	58	17	10	4	67	1.37
44855--45235	211	1.8	210	80	6	457	45	6	6	40	1.57
45619--45658	17	2.4	17	91	0	62	12	45	25	17	1.83
46759--46853	42	2.3	40	80	5	102	24	21	10	44	1.83
50521--50727	104	2.0	104	93	0	351	37	23	2	36	1.68
57028--57241	93	2.3	94	77	2	225	19	23	21	35	1.96
57029--57250	47	4.7	47	80	3	214	19	23	22	35	1.96
58734--58781	11	4.4	11	81	0	60	58	25	4	12	1.52
58734--58798	33	2.0	33	84	6	87	56	23	7	12	1.61
58789--58845	23	2.5	23	76	0	69	45	21	10	22	1.82
59703--59727	4	6.2	4	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60268--60326	21	2.7	21	81	5	73	50	10	20	18	1.75
61531--61575	23	2.0	22	83	12	56	48	0	2	48	1.13
64542--64571	15	2.0	15	93	0	51	40	3	6	50	1.45
66305--66359	25	2.2	25	80	6	67	41	1	1	54	1.21
69222--69251	15	2.0	15	93	0	51	50	6	3	40	1.45

Tables:   1

The End!