Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004230.1 Hibiscus syriacus cultivar Beakdansim tig00009260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78621

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
736--778
13
3.3
12
81
12
50
46
0
0
53
1.00
4769--4818
23
2.2
23
82
7
57
46
2
20
32
1.62
4917--4944
14
2.0
14
100
0
56
28
0
14
57
1.38
5068--5140
34
2.1
34
97
0
137
35
4
8
52
1.51
7484--7538
15
3.4
17
73
17
53
58
0
0
41
0.98
7471--7560
32
2.8
32
77
11
96
56
0
1
42
1.06
7780--7916
59
2.3
60
81
9
158
20
37
25
16
1.93
12383--12425
3
15.0
3
90
9
72
67
0
0
32
0.91
16147--16357
23
9.7
21
82
2
179
21
15
27
35
1.94
16791--16821
15
2.0
16
93
6
55
25
6
9
58
1.54
18043--18077
18
1.9
18
94
0
61
17
20
34
28
1.95
24057--24092
18
2.0
18
100
0
72
16
22
33
27
1.95
25560--25602
22
2.0
22
85
0
59
48
4
6
39
1.51
28845--28977
71
1.9
72
93
1
232
40
9
23
27
1.84
29188--29214
4
6.8
4
100
0
54
22
0
0
77
0.76
29501--29540
20
2.0
20
90
0
62
40
5
0
55
1.22
29872--29991
33
3.5
33
79
11
143
40
36
10
12
1.77
30590--30647
16
3.6
16
76
0
53
46
15
1
36
1.56
30922--30960
19
2.0
19
85
14
53
71
0
0
28
0.86
31274--31320
22
2.1
22
100
0
94
40
17
23
19
1.91
31950--32016
33
2.0
33
100
0
134
29
26
17
25
1.98
34400--34455
20
2.8
20
89
2
78
28
25
19
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34452--34605
75
2.1
75
87
2
220
38
13
14
33
1.85
35192--35230
18
2.1
18
85
4
51
51
0
5
43
1.24
37832--37868
16
2.3
16
95
0
65
35
5
18
40
1.74
41024--41059
2
18.0
2
100
0
72
50
0
0
50
1.00
41220--41342
31
3.9
32
79
9
119
32
20
17
29
1.96
41883--41913
16
1.9
16
93
0
53
41
16
0
41
1.48
51470--51505
14
2.6
14
100
0
72
36
16
5
41
1.72
51569--51607
17
2.3
18
86
8
55
30
5
30
33
1.79
51729--51805
32
2.4
33
74
8
79
35
16
16
31
1.92
52423--52469
20
2.3
22
85
10
64
48
19
0
31
1.49
52422--52471
22
2.3
23
80
19
63
48
20
0
32
1.50
55940--55987
23
2.0
24
84
4
62
64
10
4
20
1.41
56592--56623
16
1.9
17
93
6
57
28
0
0
71
0.86
56582--56633
12
4.1
13
82
9
63
23
1
0
75
0.91
56782--56924
21
6.7
22
78
13
149
30
26
16
25
1.97
56776--56906
44
3.0
43
80
11
153
29
25
16
28
1.96
77261--77304
21
2.0
22
82
4
54
29
6
22
40
1.80
78032--78076
17
2.6
17
85
0
63
42
8
13
35
1.75
78191--78229
20
2.0
20
84
0
51
41
17
10
30
1.83

Tables:   1

The End!