genome.fa.s4231.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004231.1 Hibiscus syriacus cultivar Beakdansim tig00009268_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171387

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1535--1819	110	2.7	104	84	6	360	41	15	19	24	1.90
22788--22835	22	2.2	23	82	14	57	47	22	2	27	1.62
23790--23865	2	38.0	2	100	0	152	50	0	0	50	1.00
24144--24517	158	2.4	158	84	4	472	48	7	16	27	1.72
49542--49608	29	2.3	29	80	10	75	59	1	1	37	1.16
52468--52502	18	1.9	18	94	0	61	28	34	14	22	1.93
52556--52595	21	1.9	21	89	0	62	37	17	17	27	1.92
52712--52775	30	2.1	31	85	2	85	32	21	9	35	1.86
56382--56548	2	83.0	2	98	1	325	49	0	0	49	1.05
57083--57142	30	2.0	30	93	0	102	26	26	13	33	1.93
57754--57808	22	2.6	21	81	13	69	29	21	16	32	1.95
60630--60656	2	13.5	2	100	0	54	51	48	0	0	1.00
61230--61278	14	3.5	14	80	0	53	38	20	8	32	1.82
64553--64605	23	2.3	23	86	0	70	37	24	13	24	1.91
64567--64613	23	2.1	23	84	4	60	38	21	12	27	1.90
64963--65013	20	2.7	18	72	19	50	60	3	1	33	1.26
67993--68083	3	32.0	3	73	14	77	57	0	4	38	1.19
67982--68084	8	12.9	8	79	16	108	57	0	3	38	1.17
67982--68080	19	4.9	21	73	20	95	57	0	4	38	1.18
67982--68078	30	3.3	30	79	13	112	57	0	4	38	1.18
68001--68084	11	7.6	11	69	19	50	55	0	4	39	1.21
68231--68279	20	2.5	20	79	0	53	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68214--68520	116	2.6	116	86	3	420	33	17	17	30	1.94
69848--69939	42	2.2	41	78	3	103	31	18	14	35	1.90
77208--77274	8	7.8	8	78	15	71	56	0	1	41	1.08
77208--77270	11	5.5	11	78	10	63	57	0	1	41	1.08
77208--77256	3	17.7	3	80	16	61	61	0	2	36	1.08
78199--78231	2	16.5	2	100	0	66	51	0	0	48	1.00
78484--78614	24	5.5	24	78	3	111	5	5	43	45	1.49
78480--78614	18	7.5	18	74	3	101	5	5	42	45	1.50
78502--78614	6	18.8	6	77	3	102	5	3	43	47	1.43
78808--79119	102	3.0	103	82	7	352	32	5	28	32	1.81
79263--79322	9	6.2	9	71	21	50	40	5	10	45	1.60
79253--79309	29	2.0	29	96	0	105	40	5	10	43	1.62
79272--79322	20	2.5	21	84	12	63	39	5	9	45	1.62
79426--79626	2	101.5	2	65	21	50	43	3	3	48	1.38
79426--79462	11	3.4	11	92	0	56	40	2	5	51	1.39
79551--79588	17	2.2	17	100	0	76	42	0	0	57	0.98
85283--85315	2	16.5	2	93	0	57	51	0	45	3	1.16
85718--85751	14	2.4	14	90	0	50	44	8	0	47	1.34
90813--90897	41	2.1	41	84	0	107	22	7	34	36	1.81
91365--91393	12	2.3	13	94	5	51	27	3	6	62	1.37
91378--91427	16	3.1	16	82	5	57	24	2	4	70	1.15
95933--96011	29	2.7	29	96	0	140	32	8	26	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99063--99157	22	4.6	20	79	15	88	28	16	28	26	1.97
99083--99157	22	3.5	22	89	3	109	29	18	25	26	1.98
99005--99216	117	1.8	118	85	3	302	30	16	25	27	1.96
99571--99918	58	6.0	59	89	4	510	33	11	20	34	1.89
100289--100892	68	8.9	68	89	0	895	32	12	22	32	1.92
100289--100892	271	2.2	272	88	1	933	32	12	22	32	1.92
100853--101070	81	2.7	81	86	6	300	37	10	24	27	1.88
104264--105065	39	20.6	39	87	0	1070	36	16	17	30	1.92
105068--105465	76	5.3	75	83	7	456	40	12	15	30	1.85
105336--105378	19	2.2	19	83	8	50	39	13	11	34	1.82
106715--106780	26	2.6	26	77	17	75	3	12	6	78	1.04
106720--106813	40	2.4	40	84	8	113	5	11	6	76	1.14
106729--106801	26	2.7	26	81	12	85	5	10	6	76	1.14
106720--106813	14	7.2	13	74	13	68	5	11	6	76	1.14
116958--116986	2	14.5	2	100	0	58	48	0	0	51	1.00
117511--117545	2	18.5	2	88	11	56	54	0	0	45	0.99
117508--117548	12	3.5	12	84	15	59	56	0	0	43	0.99
121710--121766	6	9.5	6	96	0	96	31	1	1	64	1.13
125749--125832	23	3.7	23	90	0	132	29	27	25	17	1.98
127031--127173	64	2.2	63	79	6	153	26	23	17	32	1.96
130283--130343	23	2.7	23	92	0	104	29	27	26	16	1.97
132558--132639	42	2.0	42	87	0	119	30	17	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133377--133420	22	2.0	22	100	0	88	31	13	13	40	1.84
135923--135992	22	2.9	25	78	19	69	45	1	4	48	1.30
141092--141125	14	2.4	14	90	0	50	58	20	14	5	1.57
141106--141211	10	10.0	10	68	15	52	62	18	8	10	1.52
141089--141157	24	2.9	24	69	16	70	57	18	13	10	1.63
141129--141209	43	1.9	42	89	2	126	65	19	6	8	1.42
141109--141211	20	4.8	20	72	12	64	62	18	8	10	1.53
141144--141207	33	1.9	33	83	0	83	65	20	6	7	1.40
141310--141360	24	2.1	24	88	0	75	60	11	13	13	1.59
144802--144858	20	2.8	20	78	0	51	40	10	19	29	1.85
145901--145947	19	2.5	19	92	0	76	44	2	23	29	1.65
146826--146851	2	13.0	2	100	0	52	50	0	0	50	1.00
154627--154668	21	2.0	21	90	4	68	45	16	14	23	1.84
156961--157386	198	2.1	200	83	3	538	40	12	12	34	1.81
157594--157644	18	2.8	18	87	0	75	27	27	9	35	1.88
160060--160105	6	7.5	6	85	4	56	32	8	2	56	1.42
160056--160105	19	2.7	19	81	3	66	34	10	2	54	1.45
161519--161992	180	2.6	179	82	6	548	40	12	12	33	1.81
162188--162231	20	2.1	21	84	12	56	31	4	18	45	1.69
162235--162325	20	4.6	20	76	6	87	48	10	13	27	1.75
162235--162325	40	2.3	40	90	3	139	48	10	13	27	1.75
164466--164495	15	2.0	15	93	0	51	40	23	13	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166442--166471	15	2.0	15	93	0	51	40	23	13	23	1.90
168405--168434	15	2.0	15	93	0	51	40	23	13	23	1.90
170912--171353	197	2.3	193	85	3	584	40	13	11	33	1.82

Tables:   1

The End!