genome.fa.s4232.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004232.1 Hibiscus syriacus cultivar Beakdansim tig00009270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92151

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1467--1592	20	6.6	20	84	10	156	36	20	21	21	1.95
1636--1722	20	4.3	20	94	0	147	22	19	19	37	1.94
1636--1733	40	2.5	40	84	3	126	23	18	18	39	1.92
2204--2306	21	4.9	21	74	2	91	21	36	19	22	1.95
2227--2309	42	2.0	42	83	4	105	21	38	19	20	1.93
3086--3127	20	2.1	20	100	0	84	26	9	23	40	1.85
3682--3717	14	2.6	14	90	0	54	30	0	22	47	1.52
3830--3947	33	3.5	33	95	1	200	43	18	23	14	1.87
4150--4200	19	2.6	20	87	6	77	19	23	23	33	1.97
4149--4235	20	4.4	20	81	5	106	18	20	24	36	1.95
4149--4235	39	2.2	39	81	6	104	18	20	24	36	1.95
6617--6670	24	2.2	24	93	0	90	40	20	18	20	1.91
8615--8666	2	26.0	2	100	0	104	50	0	0	50	1.00
25806--25866	18	3.4	18	75	8	70	52	27	14	4	1.62
25803--25870	19	3.7	19	74	16	72	51	29	14	4	1.62
27386--27428	18	2.4	19	81	14	56	58	0	2	39	1.11
29633--29678	23	2.0	23	100	0	92	34	21	0	43	1.53
32645--32676	3	10.7	3	93	0	55	31	0	3	65	1.08
34983--35028	2	23.0	2	100	0	92	50	0	0	50	1.00
39256--39324	36	1.9	36	97	2	131	21	33	27	17	1.96
48841--48866	2	13.0	2	100	0	52	50	0	0	50	1.00
49907--49931	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52021--52049	2	14.5	2	100	0	58	51	0	0	48	1.00
53691--53767	25	3.1	25	64	17	70	37	11	24	25	1.90
55107--55143	15	2.5	15	100	0	74	29	13	8	48	1.71
55479--55519	20	2.0	20	86	9	57	39	9	7	43	1.65
55738--55772	15	2.3	15	90	0	52	31	34	17	17	1.93
57420--57465	13	2.9	17	75	24	64	50	10	21	17	1.77
57869--57956	24	3.7	24	78	3	88	48	15	13	21	1.80
70529--70562	13	2.7	13	90	4	52	29	23	14	32	1.94
74438--74573	42	3.3	40	77	12	116	27	18	18	36	1.94
74923--75099	63	2.6	67	78	12	177	41	7	7	44	1.60
75006--75104	34	2.9	33	72	14	85	40	5	8	46	1.55
75681--75742	28	2.2	28	94	0	106	14	12	17	54	1.70
82623--82649	7	3.9	7	100	0	54	29	11	14	44	1.80
88323--88347	13	1.9	13	100	0	50	0	32	20	48	1.50

Tables:   1

The End!