genome.fa.s4233.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004233.1 Hibiscus syriacus cultivar Beakdansim tig00009275_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122221

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6432--6465	18	1.9	18	88	5	52	64	5	20	8	1.43
9824--9853	11	2.7	11	94	0	51	50	10	23	16	1.75
9831--10415	293	2.0	292	99	0	1161	36	9	20	32	1.86
11920--11996	19	4.1	19	81	0	91	41	7	20	29	1.81
14793--15627	418	2.0	416	90	2	1327	32	10	15	41	1.81
18662--18708	19	2.5	20	82	10	62	46	4	12	36	1.62
20093--20127	15	2.2	16	90	5	54	42	25	31	0	1.55
20942--20975	17	2.1	16	88	5	50	14	8	0	76	1.01
31197--31230	17	2.1	16	88	5	50	14	8	0	76	1.01
32256--32296	21	1.9	22	90	5	66	36	17	19	26	1.94
37791--37852	23	2.9	21	85	7	81	20	35	25	17	1.95
45677--45729	27	2.0	27	82	10	65	7	13	3	75	1.15
50137--50208	36	2.0	36	100	0	144	52	5	16	25	1.65
54248--54338	24	3.8	24	75	5	94	21	8	16	52	1.70
54478--54560	31	2.7	29	80	12	103	12	26	32	28	1.92
55506--55761	58	4.4	58	83	3	304	35	7	12	44	1.71
55506--55761	115	2.2	115	84	5	322	35	7	12	44	1.71
56222--56330	30	3.5	30	82	5	101	27	15	26	30	1.96
57600--57822	39	5.5	39	73	14	198	39	6	13	40	1.71
57686--57784	49	2.0	49	86	3	137	40	7	14	38	1.73
61162--61207	17	2.6	18	80	10	51	60	0	4	34	1.16
61449--61482	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63071--63122	20	2.6	19	70	8	50	28	26	17	26	1.97
63153--63193	20	2.1	19	86	4	55	24	24	14	36	1.93
63176--63240	20	3.3	19	78	4	58	30	21	13	33	1.92
63990--64023	12	2.8	12	90	0	50	55	29	0	14	1.40
64143--64192	24	2.1	24	92	0	82	24	20	18	38	1.93
64149--64202	24	2.2	24	93	0	90	22	16	18	42	1.89
64446--64482	3	12.3	3	88	0	56	67	0	29	2	1.04
64446--64482	15	2.5	15	95	0	65	67	0	29	2	1.04
65958--66120	21	7.8	21	76	5	141	34	32	10	22	1.88
65958--66118	42	3.8	42	81	6	193	34	32	10	21	1.88
65958--66120	63	2.6	63	74	5	159	34	32	10	22	1.88
66281--66411	42	3.1	42	92	0	217	27	13	35	23	1.93
69092--69151	21	3.0	20	76	13	59	33	16	20	30	1.94
69125--69196	20	3.6	20	74	7	56	34	16	23	25	1.95
69086--69187	41	2.5	40	79	1	96	35	14	23	26	1.94
69140--69217	40	2.0	40	84	5	104	38	12	23	25	1.90
69161--69236	40	1.9	40	86	5	109	39	13	22	25	1.90
69824--69866	2	21.5	2	95	0	77	48	0	0	51	1.00
72553--72603	2	25.5	2	100	0	102	50	0	0	49	1.00
72635--72670	18	1.9	19	88	5	56	63	0	5	30	1.17
72649--72721	25	2.7	27	72	12	69	68	6	1	23	1.21
72867--72904	2	19.0	2	94	0	67	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73093--73197	37	2.8	37	86	0	147	30	14	14	40	1.85
73881--74408	106	5.0	106	86	6	702	22	18	25	33	1.97
75967--76008	23	1.9	21	85	9	57	2	11	7	78	1.04
76001--76063	9	6.9	9	76	8	56	0	14	4	80	0.86
75979--76071	36	2.6	35	82	16	118	1	12	6	79	0.97
75996--76063	24	2.8	24	78	14	77	0	14	4	80	0.85
76023--76071	15	3.1	15	81	16	55	0	14	6	79	0.91
77216--77251	8	4.6	8	89	6	56	55	13	16	13	1.69
77216--77251	15	2.3	15	90	4	54	55	13	16	13	1.69
80545--80586	12	3.4	13	77	12	52	73	0	7	19	1.05
80592--80628	2	18.5	2	100	0	74	51	0	0	48	1.00
80646--80703	19	2.9	19	80	10	55	62	3	3	31	1.29
81469--81573	37	2.8	37	88	0	156	29	15	15	40	1.88
84232--84297	21	3.2	20	79	12	71	36	13	21	28	1.91
84218--84349	40	3.3	40	81	3	131	36	12	22	28	1.91
84200--84319	20	5.9	20	76	11	84	35	14	23	26	1.93
84293--84368	40	1.9	40	89	5	118	40	13	21	25	1.89
85454--85498	23	2.0	23	82	8	56	48	20	20	11	1.79
87607--87675	25	2.8	24	73	20	61	73	0	10	15	1.08
87626--87666	15	2.6	16	81	14	50	78	0	7	14	0.96
87717--87770	21	2.8	18	81	15	56	62	3	3	29	1.29
87721--87771	18	2.6	19	79	11	59	62	3	3	29	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88525--88629	37	2.8	37	85	0	138	31	12	14	41	1.82
89633--89751	30	3.9	30	82	8	143	23	20	23	32	1.98
90911--91042	71	1.9	71	88	3	203	49	7	9	34	1.63
91375--91416	16	2.6	16	80	0	57	40	9	2	47	1.49
91456--91524	10	6.5	10	75	18	59	50	0	7	42	1.30
91429--91564	14	9.5	14	69	19	75	46	2	11	39	1.53
91434--91521	42	2.0	45	86	6	128	48	2	10	38	1.50
91881--91966	41	2.1	42	82	8	106	40	20	1	37	1.61
92337--92374	14	2.8	13	82	17	51	47	0	10	42	1.38
92400--92525	37	3.3	37	70	17	96	43	9	3	42	1.55
92400--92543	78	1.8	78	86	2	209	42	9	3	45	1.52
100068--100102	2	18.0	2	94	5	63	51	0	0	48	1.00
111959--111990	16	2.0	16	100	0	64	56	25	12	6	1.59
112373--112406	10	3.4	10	87	0	50	58	11	14	14	1.63
113140--113191	21	2.5	21	83	0	68	36	7	15	40	1.76
120625--120675	23	2.2	23	92	0	84	47	13	17	21	1.82

Tables:   1

The End!