Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004235.1 Hibiscus syriacus cultivar Beakdansim tig00009279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56509
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Found at i:5967 original size:20 final size:21
Alignment explanation
Indices: 5942--6003 Score: 81
Period size: 22 Copynumber: 3.0 Consensus size: 21
5932 TTTTTGTGTA
*
5942 GAGGGAATCGA-TCCCCCCAT
1 GAGGGAACCGATTCCCCCCAT
**
5962 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCAT
5983 GAAGGGAACCGATTCCCCCCA
1 G-AGGGAACCGATTCCCCCCA
6004 CAGGGGAATC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 10 0.29
21 8 0.23
22 17 0.49
ACGTcount: A:0.24, C:0.35, G:0.24, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCAT
Found at i:7986 original size:15 final size:15
Alignment explanation
Indices: 7939--7979 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
7929 TTGTTTCAAC
* *
7939 ATTTTGAATTGTTTG
1 ATTTTGGATTGTTGG
7954 ATTTTTGGATTGTTGG
1 A-TTTTGGATTGTTGG
7970 ATTTTGGATT
1 ATTTTGGATT
7980 TATGGATGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.17, C:0.00, G:0.24, T:0.59
Consensus pattern (15 bp):
ATTTTGGATTGTTGG
Found at i:11091 original size:23 final size:23
Alignment explanation
Indices: 11026--11113 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
11016 CAGCTCGTAA
* *
11026 TTTGCATCGAAGTGCCACATAAT
1 TTTGCACCGAAGTGCCACATAGT
*
11049 TGT-C-CCGAA-TGACCACATAGT
1 TTTGCACCGAAGTG-CCACATAGT
* *
11070 TTTGCACCGAAGTGCCATATAGG
1 TTTGCACCGAAGTGCCACATAGT
*
11093 TTTGCACCGAAGTGCCGCATA
1 TTTGCACCGAAGTGCCACATA
11114 TTTGCCTCGA
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
20 2 0.04
21 14 0.26
22 2 0.04
23 33 0.62
24 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (23 bp):
TTTGCACCGAAGTGCCACATAGT
Found at i:13947 original size:23 final size:20
Alignment explanation
Indices: 13920--13962 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
13910 ATGGTATTGA
13920 TACCATACCCATGATATCGATAC
1 TACCA-ACCCA-G-TATCGATAC
*
13943 TACCAACTCAGTATCGATAC
1 TACCAACCCAGTATCGATAC
13963 CTTCTTCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 1 0.05
22 4 0.21
23 5 0.26
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (20 bp):
TACCAACCCAGTATCGATAC
Found at i:20718 original size:23 final size:23
Alignment explanation
Indices: 20687--20735 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
20677 GAATGACCAT
*
20687 ATAGTTTTGCACCAAAGTGCCAC
1 ATAGGTTTGCACCAAAGTGCCAC
*
20710 ATAGGTTTGCACCGAAGTGCCAC
1 ATAGGTTTGCACCAAAGTGCCAC
20733 ATA
1 ATA
20736 TTTATCCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (23 bp):
ATAGGTTTGCACCAAAGTGCCAC
Found at i:23367 original size:21 final size:21
Alignment explanation
Indices: 23343--23396 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
23333 AAACCCTACG
*
23343 GCGGTGGTATCTGAACCAGCT
1 GCGGTGGCATCTGAACCAGCT
* * *
23364 GCGGTGACATCTGACCCTGCT
1 GCGGTGGCATCTGAACCAGCT
*
23385 ACGGTGGCATCT
1 GCGGTGGCATCT
23397 AAAATGGCTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (21 bp):
GCGGTGGCATCTGAACCAGCT
Found at i:25691 original size:23 final size:23
Alignment explanation
Indices: 25646--25719 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 23
25636 TTTCTCACCT
*
25646 CTGAATGATTCAACA-AAACAGTA
1 CTGAATGATTCAACACAGA-AGTA
25669 CTGAATGATTCAACACAGAAGTACA
1 CTGAATGATTCAACACAGAAGT--A
*
25694 TTCTAAATGATTCAACACAGAAGTA
1 --CTGAATGATTCAACACAGAAGTA
25719 C
1 C
25720 ATTCTAAATG
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
23 19 0.43
24 2 0.05
25 2 0.05
27 21 0.48
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.23
Consensus pattern (23 bp):
CTGAATGATTCAACACAGAAGTA
Found at i:25710 original size:27 final size:27
Alignment explanation
Indices: 25672--25734 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
25662 AACAGTACTG
25672 AATGATTCAACACAGAAGTACATTCTA
1 AATGATTCAACACAGAAGTACATTCTA
25699 AATGATTCAACACAGAAGTACATTCTA
1 AATGATTCAACACAGAAGTACATTCTA
25726 AATGATTCA
1 AATGATTCA
25735 GAGTCATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.27
Consensus pattern (27 bp):
AATGATTCAACACAGAAGTACATTCTA
Found at i:29390 original size:27 final size:26
Alignment explanation
Indices: 29358--29416 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 26
29348 AGCGAATAAC
*
29358 ACATTGTGGTAATGATATCATAATCAA
1 ACATTGTGGTAATGATATCAGAATC-A
29385 ACATTGTGGTAATGATATCAGAATCA
1 ACATTGTGGTAATGATATCAGAATCA
29411 ACATTG
1 ACATTG
29417 AGTAACATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (26 bp):
ACATTGTGGTAATGATATCAGAATCA
Found at i:35846 original size:38 final size:38
Alignment explanation
Indices: 35795--35871 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
35785 GGAGGAAGAA
*
35795 GATGATGAAGAAGGTTGAGATTTTAACCCAAAAAGGTG
1 GATGATGAAGAAGGTTGAGATTTCAACCCAAAAAGGTG
35833 GATGATGAAGAAGGTTGAGATTTCAACCCAAAAAGGTG
1 GATGATGAAGAAGGTTGAGATTTCAACCCAAAAAGGTG
35871 G
1 G
35872 TGCTGTTGGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (38 bp):
GATGATGAAGAAGGTTGAGATTTCAACCCAAAAAGGTG
Found at i:36473 original size:2 final size:2
Alignment explanation
Indices: 36466--36511 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
36456 GATGCATGTG
36466 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36508 AT AT
1 AT AT
36512 TCATTCTTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38052 original size:2 final size:2
Alignment explanation
Indices: 38045--38082 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
38035 CTCAAAGAAA
38045 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38083 GTGCTAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38356 original size:2 final size:2
Alignment explanation
Indices: 38349--38383 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
38339 TTTTTGTTAT
38349 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38384 TAATTTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:39211 original size:54 final size:54
Alignment explanation
Indices: 39151--39260 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
39141 GTAAGCGTTC
* * * * *
39151 AATGTCACATGCAGGGTCAGTCTTGATTATTTCTTGACTTGGGGCGAAAATAAA
1 AATGTCACATGCAGGATCAGTCCTAATTATTTCTTGACTCGGGGCAAAAATAAA
*
39205 AATGTCACATGCAGGATTAGTCCTAATTATTTCTTGACTCGGGGCAAAAATAAA
1 AATGTCACATGCAGGATCAGTCCTAATTATTTCTTGACTCGGGGCAAAAATAAA
39259 AA
1 AA
39261 AAAATGAGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (54 bp):
AATGTCACATGCAGGATCAGTCCTAATTATTTCTTGACTCGGGGCAAAAATAAA
Found at i:39406 original size:27 final size:23
Alignment explanation
Indices: 39354--39407 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
39344 GTAGAATTTT
39354 TTTATTAAATTAAAAAATAATAA
1 TTTATTAAATTAAAAAATAATAA
*
39377 TTTATTACAATATCAAAAATATATATA
1 TTTATTA-AAT-TAAAAAATA-ATA-A
39404 TTTA
1 TTTA
39408 AGCATATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 7 0.27
24 3 0.12
25 8 0.31
26 3 0.12
27 5 0.19
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTATTAAATTAAAAAATAATAA
Found at i:40378 original size:18 final size:18
Alignment explanation
Indices: 40337--40381 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
40327 TATTGAAATA
* *
40337 TTTATAATTAAAAATTGT
1 TTTAAAATTAAAAATTAT
*
40355 TGTTAAAATTAAAACTTAT
1 T-TTAAAATTAAAAATTAT
40374 TTTAAAAT
1 TTTAAAAT
40382 ATTTCTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (18 bp):
TTTAAAATTAAAAATTAT
Found at i:44237 original size:39 final size:38
Alignment explanation
Indices: 44171--44269 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 38
44161 AAATCACGCC
*
44171 TAAAG-TTTAGTTTTGTTTCATTTTGGTA-CTCATCAT
1 TAAAGCTTTAGTTTTGTTTCATTGTGGTACCTCATCAT
*
44207 TAAAAGCTTTAGTTTTTGTTTTATTGTGGTACCTCATCAT
1 T-AAAGCTTTAG-TTTTGTTTCATTGTGGTACCTCATCAT
44247 TAAAGCTTTAGTTTTGTTTCATT
1 TAAAGCTTTAGTTTTGTTTCATT
44270 TTAGCACCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
36 1 0.02
37 4 0.07
38 16 0.29
39 26 0.46
40 9 0.16
ACGTcount: A:0.22, C:0.11, G:0.14, T:0.53
Consensus pattern (38 bp):
TAAAGCTTTAGTTTTGTTTCATTGTGGTACCTCATCAT
Found at i:45982 original size:43 final size:43
Alignment explanation
Indices: 45922--46162 Score: 229
Period size: 43 Copynumber: 5.7 Consensus size: 43
45912 AAAAATGCCT
* * *
45922 CAATAGGTATTGTTATTTAGCGGCGTTTGTGTGACAAACGCCG
1 CAATAGGTGTTGATATTTAGCGGCGTTTGTCTGACAAACGCCG
* * *
45965 TAATAGGTGTTGATATTTAGCGGCGTTTGTCAGAAAAACGCCG
1 CAATAGGTGTTGATATTTAGCGGCGTTTGTCTGACAAACGCCG
* * * *
46008 CAATAGGTGTTGATATTTAGTGGCGTTT-T-TAGATAAACACTG
1 CAATAGGTGTTGATATTTAGCGGCGTTTGTCT-GACAAACGCCG
* * * *
46050 CAATAGGT-TATGATGTTTAGCGGCATTTTTCTCACAAACGCCG
1 CAATAGGTGT-TGATATTTAGCGGCGTTTGTCTGACAAACGCCG
* * ** *
46093 CAATAGGTGTTGATGTTTTGCGGCGTTT-TCCCACAAACGTCG
1 CAATAGGTGTTGATATTTAGCGGCGTTTGTCTGACAAACGCCG
* * * *
46135 CAGTAAGTGTTGATGTTTTGCGGCGTTT
1 CAATAGGTGTTGATATTTAGCGGCGTTT
46163 TTGCTAAAAA
Statistics
Matches: 168, Mismatches: 25, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 70 0.42
43 95 0.57
44 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
CAATAGGTGTTGATATTTAGCGGCGTTTGTCTGACAAACGCCG
Found at i:46069 original size:42 final size:42
Alignment explanation
Indices: 45899--46121 Score: 180
Period size: 43 Copynumber: 5.2 Consensus size: 42
45889 GTTAAAGTTC
* * ** * * *
45899 GCGGCGTTTTAAAAAAAATGCCTCAATAGGTATTGTTATTTA
1 GCGGCGTTTTTAGAAAAACACCGCAATAGGTGTTGATATTTA
* * *
45941 GCGGCGTTTGTGT-GACAAACGCCGTAATAGGTGTTGATATTTA
1 GCGGCGTTT-T-TAGAAAAACACCGCAATAGGTGTTGATATTTA
* *
45984 GCGGCGTTTGTCAGAAAAACGCCGCAATAGGTGTTGATATTTA
1 GCGGCGTTT-TTAGAAAAACACCGCAATAGGTGTTGATATTTA
* * * *
46027 GTGGCGTTTTTAGATAAACACTGCAATAGGT-TATGATGTTTA
1 GCGGCGTTTTTAGAAAAACACCGCAATAGGTGT-TGATATTTA
* ** * * * *
46069 GCGGCATTTTTCTCACAAACGCCGCAATAGGTGTTGATGTTTT
1 GCGGCGTTTTT-AGAAAAACACCGCAATAGGTGTTGATATTTA
46112 GCGGCGTTTT
1 GCGGCGTTTT
46122 CCCACAAACG
Statistics
Matches: 149, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 44 0.30
43 103 0.69
44 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (42 bp):
GCGGCGTTTTTAGAAAAACACCGCAATAGGTGTTGATATTTA
Found at i:46145 original size:42 final size:42
Alignment explanation
Indices: 45955--46163 Score: 168
Period size: 42 Copynumber: 4.9 Consensus size: 42
45945 CGTTTGTGTG
* * * * **
45955 ACAAACGCCGTAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
1 ACAAACGCCGCAATAAGTGTTGATGTTTTGCGGCGTTT-TCCC
* * * * * ***
45998 AAAAACGCCGCAATAGGTGTTGATATTTAGTGGCGTTTTTAG
1 ACAAACGCCGCAATAAGTGTTGATGTTTTGCGGCGTTTTCCC
* * * * * * *
46040 ATAAACACTGCAATAGGT-TATGATGTTTAGCGGCATTTTTCTC
1 ACAAACGCCGCAATAAGTGT-TGATGTTTTGCGGC-GTTTTCCC
*
46083 ACAAACGCCGCAATAGGTGTTGATGTTTTGCGGCGTTTTCCC
1 ACAAACGCCGCAATAAGTGTTGATGTTTTGCGGCGTTTTCCC
* *
46125 ACAAACGTCGCAGTAAGTGTTGATGTTTTGCGGCGTTTT
1 ACAAACGCCGCAATAAGTGTTGATGTTTTGCGGCGTTTT
46164 TGCTAAAAAT
Statistics
Matches: 141, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 72 0.51
43 67 0.48
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
ACAAACGCCGCAATAAGTGTTGATGTTTTGCGGCGTTTTCCC
Found at i:46149 original size:85 final size:85
Alignment explanation
Indices: 45899--46164 Score: 214
Period size: 85 Copynumber: 3.1 Consensus size: 85
45889 GTTAAAGTTC
* * * * * * *** *
45899 GCGGCG-TTTTAAAAAAAATGCCTCAATAGGTATTGTTATTTAGCGGCGTTTGTGTGACAAACGC
1 GCGGCGTTTTTCACAAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTT-TCACACAAACAC
* * * *
45963 CGTAATAGGTGTTGATATTTA
65 TGCAATAAGTGTTGATGTTTA
* * * * * *
45984 GCGGCGTTTGTCAGAAAAACGCCGCAATAGGTGTTGATATTTAGTGGCGTTTTTAGATAAACACT
1 GCGGCGTTTTTCACAAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTCACACAAACACT
*
46049 GCAATAGGT-TATGATGTTTA
66 GCAATAAGTGT-TGATGTTTA
* * * * * * *
46069 GCGGCATTTTTCTCACAAACGCCGCAATAGGTGTTGATGTTTTGCGGCGTTTTCCCACAAAC-GT
1 GCGGCGTTTTTCACAAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTCACACAAACACT
* *
46133 CGCAGTAAGTGTTGATGTTTT
66 -GCAATAAGTGTTGATGTTTA
46154 GCGGCGTTTTT
1 GCGGCGTTTTT
46165 GCTAAAAATG
Statistics
Matches: 145, Mismatches: 32, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
84 2 0.01
85 105 0.72
86 38 0.26
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (85 bp):
GCGGCGTTTTTCACAAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTCACACAAACACT
GCAATAAGTGTTGATGTTTA
Found at i:46611 original size:20 final size:21
Alignment explanation
Indices: 46569--46620 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
46559 TCTCTGATAT
*
46569 GCTGCTTCTCTCTGTGCTGCC
1 GCTGCTTCTCTCTATGCTGCC
*
46590 GCTGCTTCT-TCTATGCTTCC
1 GCTGCTTCTCTCTATGCTGCC
*
46610 GCTGCTGCTCT
1 GCTGCTTCTCT
46621 GGCTGCTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 17 0.63
21 10 0.37
ACGTcount: A:0.02, C:0.37, G:0.21, T:0.40
Consensus pattern (21 bp):
GCTGCTTCTCTCTATGCTGCC
Found at i:50709 original size:2 final size:2
Alignment explanation
Indices: 50702--50730 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
50692 CTTTTAATTG
50702 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50731 ATTCAGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51557 original size:2 final size:2
Alignment explanation
Indices: 51550--51591 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
51540 CGTAACAACG
51550 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
51592 GTTTATTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Done.