genome.fa.s4237.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004237.1 Hibiscus syriacus cultivar Beakdansim tig00009282_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99510

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6128--6168	21	2.0	21	90	0	64	21	14	24	39	1.91
6133--6180	21	2.3	20	85	7	60	20	18	27	33	1.96
10418--10458	21	2.0	20	86	9	57	31	24	19	24	1.98
23910--23971	18	3.7	17	73	20	51	24	14	14	46	1.82
25836--25878	22	2.0	22	90	0	68	53	27	6	11	1.63
26837--26888	21	2.5	21	81	3	61	38	19	25	17	1.93
26877--27011	20	6.7	20	78	7	112	33	23	17	25	1.96
26874--27011	61	2.3	61	84	2	188	34	23	17	24	1.96
27148--27186	19	2.1	19	85	9	53	15	46	5	33	1.68
27179--27222	22	2.0	22	90	0	70	22	45	13	18	1.84
27486--27544	20	3.0	20	87	0	73	16	18	22	42	1.89
27681--27735	25	2.2	24	81	9	65	20	7	18	54	1.66
28863--28907	18	2.5	18	88	0	72	26	44	15	13	1.83
29391--29465	20	3.8	19	82	5	87	40	22	22	14	1.91
29391--29471	19	4.2	19	84	4	81	40	22	22	14	1.90
29430--29479	19	2.6	19	90	0	82	44	18	22	16	1.87
29491--29580	14	5.8	14	72	21	72	12	17	22	47	1.80
29486--29597	33	3.4	33	95	1	190	13	18	21	46	1.83
29582--29637	20	2.8	19	86	7	76	16	25	23	35	1.94
31497--31535	14	2.8	14	84	0	51	35	0	17	46	1.49
31662--31715	14	3.5	14	73	22	54	50	20	18	11	1.77
31747--31834	20	4.4	20	77	5	106	17	21	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32048--32097	20	2.5	20	76	0	64	24	18	20	38	1.93
32372--32405	12	2.9	12	86	4	52	17	41	5	35	1.74
32961--33014	24	2.2	24	90	0	81	22	16	20	40	1.91
35491--35598	33	3.3	33	82	10	148	44	20	21	13	1.86
35539--35602	19	3.6	19	70	20	66	42	20	25	12	1.87
35624--35663	19	2.1	19	90	0	62	12	22	15	50	1.77
35776--35812	14	2.6	14	91	0	65	45	24	0	29	1.53
37162--37228	21	3.2	21	68	4	55	19	20	35	23	1.95
37162--37284	42	2.9	41	79	7	113	22	18	36	21	1.95
37502--37686	91	2.0	90	88	8	275	47	18	12	21	1.81
39396--39458	33	1.9	33	83	6	83	44	20	23	11	1.83
39371--39463	19	5.1	18	70	17	59	45	17	23	13	1.84
39459--39503	19	2.4	19	92	0	72	8	15	26	48	1.74
40045--40156	20	5.6	20	83	8	77	22	20	19	37	1.94
40045--40156	41	2.8	40	82	8	138	22	20	19	37	1.94
40226--40278	21	2.5	22	81	6	74	33	18	26	20	1.96
40475--40521	19	2.4	19	82	10	51	57	2	4	36	1.30
43747--43794	13	3.6	13	83	13	62	66	4	0	29	1.10
44027--44852	84	9.9	83	79	4	779	26	19	24	29	1.98
44003--44852	248	3.4	248	79	5	831	26	19	24	30	1.98
48713--48747	6	5.7	6	86	6	52	65	0	2	31	1.07
48711--48747	12	2.9	13	88	8	58	62	0	5	32	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50268--50320	21	2.5	21	81	6	72	20	26	18	33	1.96
50310--50361	21	2.5	20	84	3	59	38	15	23	23	1.92
50359--50397	20	2.0	20	100	0	78	28	25	15	30	1.96
50371--50459	41	2.2	41	78	8	92	24	22	14	38	1.92
50391--50463	21	3.5	21	79	3	76	23	21	16	38	1.93
50453--50564	20	5.6	20	84	4	136	37	20	20	21	1.94
50390--50572	41	4.5	41	75	8	124	32	20	17	29	1.95
51088--51136	20	2.5	20	100	0	98	38	26	20	14	1.91
51179--51235	20	2.9	19	82	7	60	14	22	19	43	1.86
52922--53106	91	2.0	89	90	6	289	21	11	18	48	1.80
53380--53446	21	3.2	21	66	6	55	23	35	20	19	1.95
53328--53446	42	2.8	42	81	5	107	22	36	18	22	1.95
54798--54833	14	2.6	14	95	0	63	30	0	25	44	1.54
54958--55014	14	3.7	14	75	20	60	43	21	24	10	1.83
54940--55066	33	3.8	33	91	2	184	45	23	19	11	1.82
54940--55071	19	7.7	19	70	24	89	46	23	19	10	1.81
55036--55076	19	2.2	19	95	0	73	51	26	12	9	1.70
55077--55228	19	8.7	19	62	20	73	15	21	19	43	1.88
55081--55207	33	3.9	32	89	8	202	14	22	18	43	1.87
55082--55206	66	1.9	66	98	0	241	15	22	19	43	1.88
57499--57535	12	3.1	12	100	0	74	0	27	0	72	0.84
57710--57763	24	2.2	24	90	0	81	40	20	16	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58548--58599	20	2.5	21	87	3	70	36	17	23	23	1.95
58587--58666	20	4.0	20	77	9	72	35	22	18	23	1.96
58626--58675	20	2.5	20	80	0	73	38	22	18	22	1.94
58889--58976	20	4.4	20	80	5	106	38	22	21	17	1.93
58909--58996	40	2.4	38	85	11	112	42	20	20	17	1.90
59006--59032	14	1.9	14	100	0	54	7	22	22	48	1.75
59022--59108	19	4.6	19	100	0	174	14	20	16	48	1.81
61142--61222	19	4.5	19	72	20	66	44	22	19	13	1.86
61181--61238	14	3.8	14	75	20	62	48	24	17	10	1.78
61164--61254	33	2.8	33	89	0	137	46	24	17	12	1.82
61250--61346	19	5.6	19	69	22	88	12	18	21	47	1.81
61272--61330	14	3.9	14	72	20	55	10	15	23	50	1.74
61255--61346	33	2.8	33	94	0	166	11	17	21	48	1.79
61331--61374	20	2.2	20	84	4	54	18	20	20	40	1.91
61340--61385	20	2.3	20	88	7	67	15	17	26	41	1.88
61836--61926	42	2.2	42	86	3	132	21	15	40	21	1.90
62270--62376	20	5.4	20	84	1	108	37	24	21	16	1.94
62402--62484	19	4.6	19	76	14	104	13	19	20	46	1.82
62402--62512	19	6.1	19	74	15	63	14	19	20	45	1.85
62469--62512	20	2.2	20	84	4	54	18	22	20	38	1.93
62724--62910	93	2.0	90	86	10	261	46	17	13	22	1.83
64658--64700	20	2.2	20	95	0	77	53	18	18	9	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64976--65019	22	2.0	22	95	0	79	18	15	45	20	1.85
65178--65356	41	4.4	41	78	5	175	24	17	23	35	1.95
65178--65415	20	11.6	20	74	10	112	24	18	22	34	1.96
65302--65455	21	7.5	21	80	9	174	23	22	18	35	1.95
65245--65374	41	3.2	41	88	2	181	22	20	22	34	1.97
65302--65455	62	2.5	62	95	1	274	23	22	18	35	1.95
65302--65455	41	3.7	41	81	10	145	23	22	18	35	1.95
65280--65517	103	2.3	103	82	4	275	26	21	21	31	1.98
65445--65497	21	2.5	22	81	6	74	33	18	26	20	1.96
69570--69601	16	2.0	16	100	0	64	56	12	18	12	1.67
70100--70151	8	6.8	8	86	8	56	26	0	0	73	0.84
70101--70354	3	85.7	3	74	16	137	28	2	1	67	1.11
70209--70358	31	4.6	32	72	19	94	26	2	1	69	1.10
70386--70418	12	2.5	13	90	9	50	18	3	0	78	0.87
70552--70589	15	2.5	15	87	8	51	13	10	0	76	1.02
70639--70681	21	2.0	22	86	9	61	18	9	2	69	1.26
70718--70748	13	2.4	13	100	0	62	19	0	12	67	1.22
70741--70797	22	2.6	22	84	13	66	21	1	0	77	0.86
70807--70858	8	6.4	8	75	20	54	25	1	1	71	1.07
73361--73611	99	2.5	100	86	6	352	33	17	18	31	1.94
76457--76529	30	2.5	31	77	8	89	50	6	12	30	1.66
86456--86511	23	2.4	23	82	5	69	78	0	8	12	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86456--86488	6	5.7	6	89	3	50	81	0	3	15	0.80
96801--97444	81	8.0	81	88	0	921	35	12	20	31	1.89
97444--97755	46	6.8	46	88	1	394	42	13	21	23	1.88
97444--97710	138	1.9	138	92	0	444	41	13	21	23	1.88
97444--97755	138	2.3	138	88	2	439	42	13	21	23	1.88

Tables:   1

The End!