Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004238.1 Hibiscus syriacus cultivar Beakdansim tig00009283_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88349

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1897--2369
135
3.6
136
91
4
720
26
22
17
33
1.96
2289--2455
88
1.9
92
88
5
261
25
22
13
38
1.91
3443--3494
7
6.8
8
85
14
74
7
11
0
80
0.89
3443--3494
15
3.4
15
91
2
86
7
11
0
80
0.89
3442--3498
16
3.6
16
90
4
98
7
12
0
80
0.89
16245--16283
2
20.0
2
85
15
55
51
0
2
46
1.14
18072--18445
200
1.9
200
81
3
466
25
18
20
34
1.96
18529--18710
71
2.5
71
78
7
179
25
20
24
29
1.99
21743--21897
54
2.9
54
79
3
159
40
16
20
21
1.91
22257--22331
22
3.4
22
90
0
123
34
17
13
34
1.89
22678--22712
17
2.1
17
100
0
70
40
17
17
25
1.90
22995--23344
45
7.8
45
93
0
583
23
23
18
34
1.96
23463--23551
3
29.0
3
84
8
117
30
1
2
66
1.11
25024--25068
22
2.1
22
88
12
67
28
0
4
66
1.11
25293--25363
32
2.1
32
85
12
90
35
0
7
57
1.26
25439--25467
9
3.3
9
95
4
51
62
0
0
37
0.96
31354--31382
3
9.7
3
100
0
58
31
0
0
68
0.89
37744--38017
151
1.8
148
87
7
410
45
9
10
35
1.70
39620--39684
3
21.7
3
78
6
69
58
1
0
40
1.07
39621--39667
13
3.6
13
85
5
60
59
0
0
40
0.97
39842--40478
76
8.4
76
96
0
1148
34
21
19
23
1.96
40482--40811
168
2.0
168
92
3
558
38
12
13
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41324--41378
22
2.5
22
90
0
92
41
12
10
34
1.78
43598--43819
114
1.9
114
92
0
372
30
21
14
33
1.93
51321--51562
133
1.8
132
86
8
350
42
9
10
36
1.72
51727--51779
21
2.7
20
81
18
58
62
0
5
32
1.19
53070--53134
3
21.7
3
81
6
78
60
0
0
40
0.97
54154--54193
16
2.5
16
95
0
71
45
27
5
22
1.73
54583--54897
109
3.0
105
80
10
370
31
16
10
41
1.82
55012--55070
31
1.9
31
93
3
102
28
11
15
44
1.82
55042--55222
100
1.8
101
82
8
235
32
12
12
43
1.80
55260--55424
29
5.6
29
80
8
145
29
13
12
44
1.81
55260--55515
29
8.6
29
71
18
134
29
13
13
43
1.82
55365--55586
91
2.4
89
82
8
252
27
13
15
44
1.83
55799--56152
134
2.6
134
87
0
492
24
30
19
25
1.98
56076--56183
40
2.6
40
75
11
103
28
31
15
24
1.96
63174--63229
26
2.2
26
100
0
112
21
30
0
48
1.51
67980--68259
55
5.1
55
86
3
368
34
17
10
37
1.84
74374--74439
2
33.5
2
79
14
75
50
4
1
43
1.32
76932--77343
55
7.6
53
84
10
469
34
16
10
37
1.83
76932--77343
109
3.8
108
86
7
550
34
16
10
37
1.83
79173--79243
29
2.4
29
80
15
83
16
12
11
59
1.61
79197--79255
28
2.1
29
90
3
93
15
11
13
59
1.62

Tables:   1

The End!