genome.fa.s424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000424.1 Hibiscus syriacus cultivar Beakdansim tig00000775_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117920

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173--239	20	3.4	20	81	2	73	38	23	22	14	1.92
214--289	32	2.4	33	91	4	120	46	25	21	7	1.78
301--390	32	2.8	33	88	6	139	12	18	22	46	1.82
296--431	19	7.8	18	70	19	92	13	21	22	42	1.87
375--429	20	2.8	19	89	5	83	16	25	23	34	1.95
2407--2473	18	3.8	19	81	18	92	46	17	22	13	1.83
2886--2921	14	2.6	14	90	0	54	30	0	22	47	1.52
3037--3103	18	3.8	19	81	18	92	46	17	22	13	1.83
2010--3340	629	2.1	629	98	1	2580	32	12	19	34	1.90
4196--4253	23	2.5	23	80	2	62	27	17	18	36	1.94
4428--4464	12	3.1	12	100	0	74	72	0	27	0	0.84
6438--6471	14	2.4	14	90	0	59	44	23	0	32	1.54
7818--7884	21	3.2	21	68	4	55	19	20	35	23	1.95
7818--7940	42	2.9	41	80	7	113	22	17	36	22	1.95
9927--10111	19	10.1	19	77	14	174	43	22	22	12	1.86
9927--10111	33	5.1	38	81	10	174	43	22	22	12	1.86
10121--10158	20	1.9	20	88	0	58	13	26	23	36	1.91
10672--10765	20	4.7	20	77	2	80	23	17	24	35	1.95
10754--10849	41	2.3	41	98	0	147	18	23	17	39	1.92
10754--10846	20	4.6	20	78	4	96	18	24	18	38	1.92
14528--14595	27	2.6	26	82	15	70	39	1	4	54	1.30
14604--14637	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14671--14707	17	2.1	18	90	10	58	56	2	0	40	1.13
14679--14790	35	3.2	35	80	8	113	58	3	0	38	1.16
14798--14845	25	2.0	24	83	4	60	62	2	4	31	1.26
15380--15409	3	10.0	3	92	0	51	63	0	0	36	0.95
22585--22615	13	2.4	13	94	0	53	70	0	19	9	1.14
39081--39132	23	2.3	23	89	0	86	36	28	15	19	1.92
39469--39505	5	7.8	5	82	11	51	24	56	18	0	1.41
39469--39506	9	4.1	9	89	3	58	23	55	21	0	1.44
39470--39505	18	1.9	19	94	5	65	25	58	16	0	1.38
39501--39546	12	4.0	12	77	11	60	17	39	23	19	1.92
46770--46818	19	2.5	19	83	9	55	16	28	26	28	1.97
46769--46824	29	1.9	29	88	0	85	16	28	26	28	1.97
46778--46834	19	2.9	19	82	10	62	14	28	28	29	1.95
46839--46885	5	9.2	5	77	13	51	21	55	19	4	1.60
46841--46867	14	1.9	14	100	0	54	25	59	14	0	1.36
46855--46896	22	1.9	22	95	0	75	19	50	19	11	1.78
48547--48575	2	14.5	2	100	0	58	48	0	0	51	1.00
50332--50370	20	2.0	20	100	0	78	17	25	35	20	1.95
53005--53038	13	2.6	13	95	0	59	44	5	14	35	1.70
57167--57207	21	2.0	21	100	0	82	24	17	9	48	1.76
57334--57373	21	1.9	21	89	0	62	30	7	7	55	1.56
71172--71232	23	2.7	24	73	16	58	45	1	1	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71516--71565	17	2.7	18	78	9	57	30	0	0	70	0.88
71906--71942	18	2.1	18	100	0	74	43	5	5	45	1.49
81161--81195	17	2.1	17	88	0	52	54	0	2	42	1.15
85779--85834	21	2.9	18	76	20	60	17	46	23	12	1.82
85779--85828	22	2.3	22	89	6	75	18	50	22	10	1.76
85798--85834	18	2.1	17	95	5	65	18	43	24	13	1.86
85851--86054	27	7.1	28	82	9	225	34	4	21	39	1.73
85851--86054	30	7.1	28	81	8	216	34	4	21	39	1.73
85844--86054	57	3.7	57	84	6	248	34	4	21	38	1.75
91930--91994	3	21.7	3	81	6	69	33	1	4	60	1.27
92838--92909	2	36.0	2	100	0	144	50	0	0	50	1.00
99434--99518	32	2.7	32	90	0	125	49	27	7	16	1.71
99881--100112	32	7.2	32	88	1	320	30	13	23	32	1.93
99880--100112	65	3.6	64	88	1	322	30	13	23	32	1.93
99881--100112	97	2.4	97	91	0	365	30	13	23	32	1.93
100214--100338	34	3.7	34	84	0	133	32	16	12	38	1.87
100661--100952	36	8.0	36	78	4	264	27	23	13	36	1.92
100686--100822	21	7.4	20	69	22	70	25	27	10	36	1.88
100879--100961	39	2.1	39	81	0	94	30	18	13	38	1.88
101047--101222	43	4.1	43	88	1	255	26	12	30	30	1.93
101310--101603	91	3.3	90	91	2	443	23	17	22	37	1.94
101814--101878	3	21.7	3	78	6	60	32	1	3	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101806--101875	12	5.8	12	75	14	63	32	1	2	62	1.18
102723--102777	2	27.5	2	100	0	110	49	0	0	50	1.00
103672--103739	14	4.7	14	66	20	50	39	5	4	50	1.47
105596--105637	18	2.3	18	87	0	57	21	40	16	21	1.91
105659--105807	29	5.1	30	82	6	157	32	4	20	42	1.71
106399--106506	20	5.3	20	82	6	110	32	25	17	25	1.97
106378--106513	61	2.2	60	78	5	148	33	24	19	23	1.97
106722--106781	27	2.2	27	84	3	75	45	30	5	20	1.72
107070--107254	19	10.1	19	76	14	165	11	21	22	44	1.85
107070--107159	39	2.3	38	96	1	162	11	18	22	47	1.80
107070--107170	39	2.6	39	89	4	116	9	19	24	45	1.81
107142--107229	33	2.6	33	92	1	140	11	25	25	38	1.89
107197--107254	20	2.9	20	80	10	64	13	24	18	43	1.87
109256--109378	42	2.9	42	80	2	122	22	36	17	22	1.95
109312--109381	21	3.3	21	66	7	61	22	37	20	20	1.95
110737--110772	14	2.6	14	95	0	63	30	0	25	44	1.54
110955--111081	33	3.9	32	84	8	175	15	22	18	43	1.88
110948--111078	66	2.0	66	95	0	235	16	22	18	42	1.89
113367--113391	12	2.1	12	100	0	50	0	28	0	72	0.86
113564--113617	24	2.2	24	90	0	81	38	20	16	24	1.92
114671--114726	20	2.8	20	94	0	94	37	23	23	16	1.93
114745--114812	19	3.8	19	83	12	92	13	20	17	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114910--114946	14	2.6	14	86	0	56	48	21	0	29	1.50
116806--116857	20	2.7	19	79	5	59	38	23	21	17	1.93
116841--116898	14	3.4	18	71	24	54	46	22	18	12	1.82
116841--116918	31	2.4	32	93	4	131	46	24	19	10	1.81
116852--116906	18	3.2	18	69	30	57	50	21	16	10	1.75
116841--116929	32	2.7	31	86	5	108	46	25	17	10	1.80
116947--117004	14	3.9	14	79	16	71	10	17	24	48	1.78
116930--117020	32	2.8	33	94	3	166	12	18	21	47	1.81
117537--117581	18	2.5	18	88	0	72	13	15	44	26	1.83

Tables:   1

The End!