Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004240.1 Hibiscus syriacus cultivar Beakdansim tig00009295_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149734

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8425--8451
4
6.8
4
100
0
54
22
0
0
77
0.76
12842--12876
16
2.2
16
94
0
61
60
17
5
17
1.55
16908--16932
2
12.5
2
100
0
50
52
0
0
48
1.00
19547--19571
4
6.2
4
100
0
50
76
0
0
24
0.80
26248--26393
53
2.8
53
92
4
224
25
27
16
30
1.97
26911--27130
42
5.0
42
76
13
228
29
22
20
28
1.98
26983--27007
13
1.9
13
100
0
50
24
20
24
32
1.98
26861--27223
135
2.7
135
97
0
681
28
21
19
30
1.97
27118--27142
13
1.9
13
100
0
50
24
20
24
32
1.98
27087--27316
93
2.5
93
96
0
433
27
22
19
30
1.98
33339--33367
12
2.4
12
100
0
58
41
24
17
17
1.90
38986--39108
24
5.1
24
85
3
140
24
14
18
42
1.88
44085--44195
8
13.9
8
80
11
120
0
58
0
41
0.98
44084--44207
10
12.6
10
81
10
121
0
56
0
43
0.99
44084--44208
14
8.6
14
82
13
155
0
56
0
43
0.99
44084--44203
12
9.8
12
89
7
163
0
56
0
43
0.99
47077--47172
40
2.3
40
79
13
115
33
12
17
36
1.88
47463--47532
13
5.9
12
73
19
58
14
8
15
61
1.56
47453--47536
23
3.7
23
98
0
159
13
9
16
60
1.58
47453--47566
10
10.1
10
70
22
75
12
10
17
59
1.60
47523--47563
14
3.2
14
74
25
54
7
14
21
56
1.63
47454--47566
23
4.9
23
90
6
129
12
10
17
59
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51795--51841
20
2.3
20
100
0
94
19
10
31
38
1.86
52446--52496
3
17.0
3
100
0
102
33
0
0
66
0.92
59490--59523
16
2.1
16
94
0
59
32
26
8
32
1.87
61627--61733
24
4.5
24
71
0
88
47
16
13
22
1.81
61627--61735
48
2.3
48
78
0
128
47
16
13
22
1.81
69532--69572
17
2.4
18
88
12
68
24
31
34
9
1.88
73441--73547
24
4.5
24
74
0
97
48
16
14
20
1.81
73441--73549
48
2.3
48
77
0
119
48
16
14
20
1.81
78500--78547
21
2.2
22
81
3
62
25
4
0
70
1.04
91203--91242
21
1.9
21
89
0
62
27
7
17
47
1.74
93002--93064
3
21.0
3
83
6
83
39
0
0
60
0.97
93004--93062
12
4.9
12
93
6
102
40
0
0
59
0.97
93064--93108
16
2.9
15
80
9
54
77
2
0
20
0.87
94651--94695
22
2.0
22
86
8
63
42
0
0
57
0.98
94751--94792
23
2.0
23
86
13
63
50
0
0
50
1.00
98633--98664
15
2.1
15
94
0
55
28
18
6
46
1.73
107431--108242
115
7.1
115
96
0
1482
34
15
20
29
1.93
109002--109174
74
2.4
74
82
4
190
35
15
16
32
1.90
109076--109338
113
2.4
109
83
5
314
37
15
19
27
1.92
109257--109549
124
2.4
122
85
6
389
41
15
19
23
1.89
109693--109758
3
22.0
3
84
6
89
39
0
0
60
0.97
109695--109758
12
5.3
12
90
7
103
40
0
0
59
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111314--111358
22
2.0
22
86
8
63
42
0
0
57
0.98
111414--111455
23
2.0
23
86
13
63
50
0
0
50
1.00
115006--115046
20
2.0
20
95
0
73
29
21
9
39
1.86
119853--119891
19
2.2
19
86
9
55
41
2
5
51
1.38
120083--120130
19
2.7
17
83
6
60
54
4
2
39
1.32
120814--120874
20
3.0
20
78
19
56
31
1
1
65
1.12
122991--123064
13
5.9
12
71
14
53
17
2
10
68
1.30
123017--123064
13
3.8
13
83
2
62
16
4
12
66
1.39
132704--132775
31
2.3
31
100
0
144
33
16
25
25
1.96
132759--132805
12
3.9
12
88
0
67
38
21
21
19
1.94
133620--133932
63
5.0
63
91
0
475
32
18
17
30
1.95
134073--134117
21
2.1
22
83
4
56
40
20
6
33
1.78
134732--134771
20
2.0
21
85
5
55
55
12
0
32
1.38
135093--135136
21
2.2
20
83
4
52
29
22
11
36
1.89
138561--138630
32
2.2
32
84
0
86
17
27
30
25
1.97
139949--140004
3
18.3
3
96
3
103
66
0
0
33
0.92
144797--144882
31
2.7
31
85
5
111
32
22
19
25
1.97
144930--145226
43
6.9
42
73
7
188
25
16
26
31
1.97
144936--145141
86
2.4
86
83
4
263
22
18
26
32
1.97
144958--145184
86
2.6
87
77
9
234
24
18
25
30
1.98
145233--145330
44
2.3
44
79
6
114
30
18
19
31
1.96
145646--145725
21
3.8
21
86
0
88
3
38
13
43
1.62

Tables:   1

The End!