genome.fa.s4241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004241.1 Hibiscus syriacus cultivar Beakdansim tig00009299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59288

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521--560	21	1.9	21	94	0	71	25	35	27	12	1.92
2618--2662	23	2.0	23	81	0	54	44	6	20	28	1.76
6251--6334	22	3.8	22	83	9	98	22	30	26	20	1.98
7888--7926	18	2.2	18	85	0	51	38	30	23	7	1.83
12614--12675	27	2.2	28	82	2	72	43	9	6	40	1.63
13487--13611	31	4.0	32	76	11	123	32	20	18	29	1.96
13965--14019	25	2.2	24	78	9	58	41	14	0	43	1.45
15654--15793	72	1.9	72	88	0	208	33	21	10	35	1.87
16159--16218	30	2.0	31	83	9	79	25	16	8	50	1.73
19443--19484	13	3.2	13	96	0	75	16	47	19	16	1.83
20780--20814	18	1.9	18	88	0	52	54	0	17	28	1.43
25913--25956	23	1.9	23	90	0	70	38	18	18	25	1.92
26700--26745	23	2.0	24	83	12	60	54	0	0	45	0.99
31866--31897	16	2.0	16	100	0	64	56	25	12	6	1.59
31964--32010	16	2.9	16	93	0	85	55	23	12	8	1.64
35870--35931	24	2.6	24	92	0	97	51	22	12	12	1.74
35874--35954	34	2.4	34	75	4	83	48	22	14	14	1.81
41924--41972	21	2.3	21	96	0	89	42	12	18	26	1.85
50235--50277	23	2.0	22	86	13	63	37	0	0	62	0.95
53505--53531	3	9.0	3	100	0	54	66	0	0	33	0.92
54314--54339	2	13.0	2	100	0	52	50	0	0	50	1.00
55994--56028	2	18.0	2	94	5	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57928--57973	21	2.2	21	88	0	65	52	13	8	26	1.69

Tables:   1

The End!