genome.fa.s4242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004242.1 Hibiscus syriacus cultivar Beakdansim tig00009301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129552

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2489--2539	23	2.2	23	96	0	93	49	13	15	21	1.79
9246--9351	32	3.4	31	77	11	90	31	32	23	13	1.93
10335--10394	29	2.1	29	100	0	120	50	13	13	23	1.77
14947--15006	29	2.1	29	100	0	120	50	13	13	23	1.77
21787--21869	44	1.9	42	85	4	112	33	6	27	32	1.81
21792--21880	19	4.3	20	76	17	92	37	5	26	30	1.80
22232--22387	19	7.9	19	74	8	141	37	20	19	22	1.95
22259--22515	19	13.4	20	66	14	105	35	21	20	22	1.96
22240--22397	40	4.0	40	92	0	262	36	22	19	21	1.95
22344--22450	53	2.0	53	94	3	189	36	21	20	21	1.95
22369--22515	56	2.7	57	83	9	173	36	20	19	23	1.95
23978--24057	31	2.6	31	80	7	99	48	20	11	20	1.79
27287--27314	13	2.2	13	100	0	56	28	0	0	71	0.86
27769--27819	12	4.0	12	77	20	50	50	1	0	47	1.12
28726--28794	33	2.1	33	100	0	138	39	0	24	36	1.56
29442--29532	38	2.4	37	84	10	130	12	10	38	38	1.78
29645--29710	28	2.4	28	94	2	116	12	9	34	43	1.73
29377--29764	201	2.0	197	89	5	608	21	13	31	34	1.91
31076--31110	9	3.7	9	85	14	52	31	11	54	2	1.51
31081--31117	11	3.5	11	85	14	60	29	8	56	5	1.51
31076--31123	20	2.4	20	96	0	87	31	8	54	6	1.55
31880--31921	24	1.9	21	81	18	50	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34342--34402	2	30.5	2	100	0	122	49	0	0	50	1.00
36613--36660	20	2.3	21	85	3	62	16	18	10	54	1.70
36623--36667	21	2.2	20	88	4	63	17	20	11	51	1.75
39810--39925	2	58.0	2	98	0	223	50	49	0	0	1.06
40076--40335	54	4.8	54	79	6	199	35	10	15	38	1.82
40091--40390	53	5.6	53	80	6	277	34	10	16	39	1.83
40100--40392	105	2.7	107	82	5	344	33	10	16	39	1.83
40445--40557	42	2.7	41	77	9	113	28	21	21	29	1.98
41094--41119	13	2.0	13	100	0	52	38	7	7	46	1.61
41587--41628	18	2.3	19	84	12	61	61	4	9	23	1.45
49214--49244	16	1.9	16	93	0	53	35	9	35	19	1.85
51513--51694	30	6.1	29	89	3	197	22	47	20	9	1.79
51622--51674	10	5.3	10	78	17	65	22	50	16	9	1.74
51571--51694	30	4.1	30	92	4	205	24	50	17	8	1.73
52342--52385	21	2.1	21	91	0	70	29	0	15	54	1.42
52362--52415	28	1.9	28	96	0	99	29	0	12	57	1.36
55417--55994	60	10.2	59	85	11	718	41	0	11	46	1.42
55414--55994	109	5.1	120	81	12	691	41	0	11	46	1.42
55625--55706	21	3.3	24	71	25	73	40	0	12	47	1.41
55941--56010	25	3.1	22	79	16	63	38	0	11	50	1.39
55962--56009	14	3.6	14	81	16	66	35	0	16	47	1.47
57910--57984	30	2.5	31	77	18	86	49	10	1	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58162--58201	21	1.9	21	100	0	80	57	15	0	27	1.38
58299--58368	37	2.0	35	86	10	99	48	10	0	41	1.36
58392--58456	28	2.3	29	82	10	82	46	15	1	36	1.55
58537--58574	9	4.2	9	83	10	51	65	2	0	31	1.06
58745--58780	11	3.2	11	84	7	54	36	19	22	22	1.95
58971--59036	33	2.0	33	96	0	123	12	22	39	25	1.89
59046--59098	10	5.3	10	76	17	56	11	16	49	22	1.78
59026--59149	30	4.1	30	90	4	196	8	17	49	24	1.75
62305--62399	24	4.0	24	87	0	118	18	8	15	56	1.64
62266--62392	48	2.6	48	82	3	130	21	11	14	53	1.71
74764--75051	72	4.0	72	97	0	531	25	17	29	27	1.98
75895--76121	87	2.6	89	85	1	323	44	8	12	34	1.73
76134--76802	198	3.4	199	87	4	915	31	15	14	39	1.87
77028--77074	20	2.3	20	85	0	58	42	2	0	55	1.12
77038--77076	20	2.0	20	94	0	69	38	2	0	58	1.12
77684--77766	30	2.8	31	79	13	86	49	1	1	48	1.16
77705--77792	28	3.1	27	75	6	70	48	1	1	48	1.16
77692--77792	14	7.2	14	70	13	57	48	0	0	49	1.14
77756--77800	14	3.1	15	84	6	58	55	0	0	44	0.99
78111--78160	23	2.2	23	88	0	73	32	12	12	44	1.78
78095--78325	87	2.7	87	90	0	363	32	12	10	43	1.78
78188--78447	110	2.4	110	92	0	412	33	14	9	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78275--78348	23	3.2	23	92	0	112	33	18	9	37	1.84
78385--78447	24	2.7	23	78	4	72	38	19	4	38	1.73
79275--79312	19	2.0	19	85	10	51	50	7	0	42	1.31
82780--83158	190	2.0	191	82	3	469	39	5	9	45	1.59
85846--85989	66	2.2	66	98	0	279	36	15	22	25	1.94
87934--87981	13	3.6	13	80	5	60	60	0	2	37	1.09
90945--90983	20	2.0	20	94	0	69	38	30	17	12	1.88
90944--90983	9	4.2	9	81	12	53	37	32	17	12	1.87
90986--91042	28	2.0	28	93	0	96	24	21	36	17	1.94
91078--91139	29	2.1	29	100	0	124	12	30	33	22	1.92
91215--91270	27	2.1	27	100	0	112	28	25	21	25	1.99
91416--91461	23	2.0	23	100	0	92	47	4	39	8	1.54
91416--91476	23	2.6	23	86	5	59	50	6	36	6	1.54
91632--91720	41	2.2	41	78	8	92	42	1	10	46	1.45
91701--91792	46	2.0	48	87	8	136	41	0	11	46	1.41
91833--91909	34	2.3	33	81	14	88	40	0	12	46	1.42
91955--92001	16	3.0	16	84	9	53	29	0	10	59	1.31
91976--92006	15	2.1	14	94	5	53	38	0	6	54	1.26
95701--95759	26	2.3	24	78	16	64	40	3	8	47	1.51
96569--96631	28	2.2	30	91	5	103	57	11	0	31	1.34
96573--96638	28	2.4	28	85	10	98	56	10	0	33	1.34
96608--96656	21	2.3	21	85	3	71	53	16	0	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97264--97354	29	3.1	29	98	0	173	17	35	31	15	1.91
107585--107624	21	1.9	21	89	0	62	17	22	17	42	1.89
107582--107973	20	19.1	21	81	8	425	23	21	16	38	1.93
107582--107973	82	4.8	82	84	5	485	23	21	16	38	1.93
107582--107963	41	9.3	41	83	7	431	23	21	16	38	1.92
107606--107973	143	2.6	143	88	3	544	24	20	16	38	1.92
107606--108023	143	2.9	142	85	4	407	25	21	16	37	1.93
108738--108791	24	2.2	24	93	0	90	20	18	20	40	1.91
111276--111325	19	2.5	20	81	9	59	40	24	20	16	1.91
111298--111428	19	7.7	19	68	23	103	45	18	22	12	1.83
111298--111424	33	3.8	33	91	0	209	45	18	22	13	1.84
111424--111469	19	2.4	19	88	0	65	13	15	23	47	1.80
111453--111498	14	3.3	14	84	0	65	6	21	23	47	1.74
111618--111654	14	2.6	14	82	0	56	43	21	2	32	1.67
113495--113565	19	3.6	19	84	3	88	47	21	18	12	1.81
113577--113639	20	3.2	20	81	4	83	12	19	15	52	1.74
113586--113640	20	2.8	19	91	5	92	10	21	16	50	1.75
113729--114030	94	3.2	93	96	0	541	48	19	11	20	1.80
113940--114092	78	1.9	79	89	5	236	44	18	12	24	1.84
115746--115818	20	3.7	20	77	12	80	47	19	20	12	1.81
115830--115866	19	1.9	19	100	0	74	8	27	21	43	1.80
116446--116559	20	5.7	20	88	2	174	21	21	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117631--117664	17	2.1	17	88	5	52	67	0	0	32	0.91
118421--118447	3	9.0	3	100	0	54	33	0	0	66	0.92
120341--120375	15	2.4	15	95	4	63	31	0	0	68	0.90
122400--122449	25	2.0	25	100	0	100	12	36	12	40	1.79
128564--128697	67	2.0	66	98	1	259	32	22	20	24	1.98

Tables:   1

The End!