Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004243.1 Hibiscus syriacus cultivar Beakdansim tig00009302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96313

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1492--1535
22
2.0
22
82
8
54
36
4
2
56
1.32
11339--11386
24
2.0
23
84
11
62
22
10
22
43
1.84
12269--12316
21
2.4
21
86
6
64
45
8
18
27
1.78
12379--12422
21
2.0
23
86
8
65
20
36
22
20
1.95
14234--14304
37
1.9
37
82
5
90
33
19
26
19
1.96
14252--14307
19
3.0
19
84
2
78
30
19
30
19
1.97
14883--14957
31
2.4
32
82
6
91
14
6
28
50
1.68
15566--15597
15
2.1
15
100
0
64
40
6
18
34
1.76
16736--16769
17
2.0
17
88
11
52
44
2
0
52
1.16
17632--17669
14
2.5
15
84
16
51
50
0
7
42
1.31
17681--17722
3
14.0
3
100
0
84
33
0
0
66
0.92
21032--21099
33
2.1
33
100
0
136
39
11
8
39
1.73
32901--32930
15
2.0
15
93
0
51
33
13
23
30
1.93
34188--34257
30
2.3
30
92
0
113
42
11
1
44
1.49
36552--36585
16
2.1
16
100
0
68
29
14
11
44
1.81
52108--52172
32
2.0
32
87
0
94
53
7
16
21
1.68
53814--53857
22
2.0
22
95
0
79
45
20
9
25
1.80
54862--54921
11
5.3
11
74
20
52
75
0
3
21
0.95
54857--54961
23
4.6
22
67
20
63
71
0
4
23
1.05
54857--54916
8
7.2
8
77
20
52
75
0
3
21
0.95
54854--54970
12
9.4
12
66
22
55
71
0
5
23
1.05
56153--56194
16
2.8
15
78
7
50
73
0
2
23
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56223--56318
36
2.6
37
83
3
131
46
7
1
44
1.38
56428--56683
36
7.2
36
72
19
193
47
6
2
43
1.41
56527--56580
25
2.2
25
93
0
90
48
7
0
44
1.31
56491--56616
61
2.0
62
93
1
218
48
7
0
43
1.36
56428--56683
136
1.9
133
80
9
302
47
6
2
43
1.41
56544--56683
38
3.8
35
76
13
138
47
7
2
43
1.42
57294--57761
84
5.7
81
79
5
492
22
22
26
28
1.99
57291--57720
165
2.6
165
97
0
797
23
21
26
28
1.99
61080--61125
19
2.4
19
92
0
74
67
6
13
13
1.41
62860--62926
16
3.9
17
73
21
59
74
0
2
22
0.95
64160--64231
26
2.7
25
82
18
76
75
1
4
19
1.05
64240--64560
36
8.8
36
65
18
121
46
4
3
46
1.39
64227--64324
36
2.6
36
83
6
126
46
7
1
44
1.37
64369--64560
76
2.5
72
83
9
206
49
5
2
42
1.40
64532--64585
25
2.2
25
93
0
90
48
7
0
44
1.31
64496--64621
61
2.0
62
93
1
218
48
7
0
43
1.36
64553--64687
38
3.6
36
80
10
130
47
7
2
42
1.43
64433--64688
136
1.9
133
80
9
302
47
6
2
43
1.41
67908--67953
23
2.0
24
86
4
67
21
2
2
73
1.04
69761--69873
59
1.9
58
90
1
181
31
21
9
37
1.86
74477--74569
31
3.0
31
90
4
143
29
23
19
27
1.98
76431--76485
24
2.3
24
93
0
92
9
43
27
20
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76524--76584
24
2.5
24
77
15
63
21
27
21
29
1.98
80182--80254
36
2.0
36
100
0
146
34
21
10
32
1.89
94858--94895
2
19.5
2
94
5
69
47
0
0
52
1.00

Tables:   1

The End!