genome.fa.s4244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004244.1 Hibiscus syriacus cultivar Beakdansim tig00009303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155556

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532--560	12	2.5	12	94	5	51	27	41	0	31	1.56
10815--10934	63	1.9	62	81	9	147	40	5	7	47	1.54
12499--12542	14	3.4	13	80	20	56	47	6	0	45	1.29
12538--12584	14	3.3	14	79	8	51	38	0	2	59	1.09
12639--12684	24	1.9	25	83	16	62	52	2	0	45	1.13
13269--13335	12	5.8	12	70	16	52	40	11	2	44	1.56
19205--19268	21	3.0	21	76	15	67	42	7	0	50	1.31
19212--19237	13	2.0	13	100	0	52	38	7	0	53	1.30
19205--19296	21	4.1	23	75	12	66	41	7	1	50	1.38
19167--19294	58	2.3	58	82	6	147	38	8	3	50	1.49
19211--19447	23	10.2	24	64	20	87	41	7	5	46	1.53
19320--19534	19	10.9	19	66	23	65	43	6	6	43	1.56
19462--19514	19	2.7	21	80	14	67	47	1	9	41	1.47
19523--19567	2	22.5	2	100	0	90	48	0	0	51	1.00
19698--19835	70	2.0	70	89	2	215	33	9	6	50	1.60
29423--29463	18	2.3	18	91	4	66	63	2	4	29	1.28
29917--30066	74	2.0	75	96	1	275	48	14	14	23	1.79
41187--41257	3	23.3	3	85	8	99	36	0	0	63	0.95
41176--41245	9	7.8	9	87	6	79	41	0	0	58	0.98
47125--47169	24	1.9	23	82	13	56	20	13	11	55	1.68
55636--56080	55	8.2	55	80	5	390	32	15	23	29	1.95
55813--56022	51	4.0	51	79	9	226	29	14	26	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59342--59401	26	2.3	26	94	0	102	50	18	15	16	1.79
60417--60467	25	2.0	25	81	11	59	35	5	1	56	1.35
60711--60753	14	3.1	14	96	0	77	34	13	39	11	1.82
60962--61005	21	2.1	21	100	0	88	25	38	13	22	1.91
73544--73569	12	2.2	12	100	0	52	42	7	15	34	1.75
76418--76446	3	9.7	3	100	0	58	0	34	34	31	1.58
78987--79115	29	4.4	29	80	3	143	39	20	20	19	1.93
78978--79121	58	2.5	58	82	2	173	40	19	22	18	1.92
82649--82774	50	2.5	50	88	2	173	47	19	15	17	1.82
82776--82889	29	4.0	29	86	1	140	38	14	23	22	1.92
85655--85713	6	9.8	6	88	0	91	1	11	50	35	1.49
85653--85713	18	3.4	18	93	0	104	1	11	49	37	1.49
87643--87680	19	2.1	19	85	9	53	15	23	13	47	1.81
87676--87702	14	1.9	14	100	0	54	0	0	7	92	0.38
88550--88583	12	2.8	12	86	0	50	85	0	2	11	0.71
101130--101190	6	10.2	6	92	0	86	4	14	49	31	1.65
101465--101519	22	2.5	22	75	0	56	29	9	23	38	1.85
105945--106007	31	2.0	31	93	6	110	31	0	6	61	1.21
107125--107164	21	1.9	21	89	0	62	40	5	0	55	1.22
124670--124751	30	2.8	30	96	1	148	53	6	0	40	1.26
124993--125045	21	2.5	21	93	0	88	30	32	20	16	1.95
125049--125159	40	2.7	42	84	2	154	23	21	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125078--125215	61	2.3	61	94	0	240	23	19	23	33	1.97
125049--125215	19	8.3	19	73	12	136	23	20	23	32	1.98
126068--126244	42	4.3	42	85	5	236	35	24	19	21	1.96
126065--126244	82	2.2	83	88	6	258	34	23	19	22	1.96
126065--126244	21	8.7	21	75	10	165	34	23	19	22	1.96
127329--127369	3	14.0	3	94	5	75	34	0	0	65	0.93
128383--128450	3	22.0	3	74	16	59	32	2	1	63	1.18
128383--128435	11	4.6	11	77	9	52	28	3	1	66	1.20
130614--130642	2	14.5	2	100	0	58	48	0	0	51	1.00
133957--133988	15	2.1	15	94	0	55	25	18	9	46	1.79
138250--138292	20	2.2	20	86	0	59	34	20	13	30	1.92
140899--140937	20	2.0	20	95	5	71	64	0	25	10	1.25
148622--148664	10	4.3	10	85	11	52	32	20	16	30	1.95
148612--148654	20	2.2	20	86	0	59	34	20	13	30	1.92
148638--148665	10	2.8	10	100	0	56	32	17	21	28	1.96
153519--153567	19	2.5	19	86	3	71	83	0	10	6	0.80
153533--153564	12	2.8	12	95	4	57	87	0	12	0	0.54
153519--153566	7	7.3	7	79	13	57	85	0	10	4	0.73
155303--155556	112	2.3	113	84	4	327	38	12	18	29	1.88

Tables:   1

The End!