genome.fa.s4245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004245.1 Hibiscus syriacus cultivar Beakdansim tig00009308_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199927

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908--953	3	15.3	3	90	0	74	71	0	0	28	0.86
1369--1421	16	3.4	15	76	5	52	32	1	0	66	1.03
6295--6365	33	2.2	33	87	5	99	42	23	2	30	1.69
7173--7231	29	2.0	29	100	0	118	38	13	13	33	1.84
7701--7735	17	2.1	18	89	10	56	74	11	0	14	1.08
8182--8268	31	2.8	30	83	8	102	48	4	0	47	1.22
8182--8265	32	2.7	32	82	12	102	48	4	0	46	1.23
9641--9695	25	2.2	26	93	3	94	54	0	0	45	0.99
9641--9713	25	2.8	25	83	10	74	58	2	0	38	1.12
13421--13472	25	2.2	25	89	6	81	28	3	1	65	1.21
13428--13477	25	2.0	25	92	7	84	28	6	2	64	1.28
21947--22001	28	2.0	28	85	0	74	32	18	16	32	1.93
40058--40112	21	2.5	22	82	2	58	38	3	1	56	1.28
43529--43557	2	14.5	2	100	0	58	0	48	0	51	1.00
47246--47274	14	2.0	15	93	6	51	24	0	0	75	0.80
50276--50328	27	1.9	27	84	3	70	39	7	1	50	1.41
56818--56843	2	13.0	2	100	0	52	50	0	0	50	1.00
59528--59559	17	1.9	16	93	6	55	53	12	0	34	1.39
60202--60323	60	2.0	60	96	0	226	37	6	9	45	1.63
60386--60410	13	1.9	13	100	0	50	60	0	8	32	1.26
65862--65900	2	19.5	2	100	0	78	51	0	0	48	1.00
90884--90965	4	20.5	4	82	5	85	24	31	0	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100264--100292	2	14.5	2	100	0	58	51	0	0	48	1.00
104725--104759	6	5.8	6	100	0	70	51	0	48	0	1.00
114006--114038	15	2.1	16	88	5	50	9	24	15	51	1.72
114788--114822	16	2.1	17	94	5	63	34	25	8	31	1.86
116376--116430	14	3.9	15	76	21	57	61	1	0	36	1.06
117197--117232	19	1.9	19	88	5	56	41	0	0	58	0.98
125665--125768	36	2.9	36	88	0	145	40	23	16	20	1.91
129199--129227	3	10.0	3	92	7	51	0	31	0	68	0.89
136929--137026	22	4.5	22	71	10	92	38	0	10	51	1.36
136912--137007	44	2.4	40	84	11	117	42	0	7	50	1.30
136867--136982	15	7.3	15	79	13	126	46	0	2	50	1.21
136882--137036	66	2.3	67	85	3	206	42	0	6	50	1.33
137006--137412	32	13.7	32	68	24	200	32	0	13	53	1.41
136964--137183	54	4.1	54	95	1	392	34	0	12	52	1.40
137038--137080	22	2.0	22	100	0	86	34	0	13	51	1.42
136964--137214	108	2.4	105	89	7	393	33	0	13	52	1.40
137114--137429	166	1.9	160	89	6	483	31	0	14	53	1.41
137383--137504	22	6.4	18	73	19	54	34	0	13	52	1.40
137392--137477	22	4.0	22	86	5	122	36	0	12	51	1.40
137396--137533	22	5.9	22	73	20	111	37	0	11	50	1.39
137309--137541	54	4.5	53	77	14	202	35	0	12	52	1.39
137555--137611	30	1.9	30	92	0	96	45	7	7	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138186--138280	47	2.0	47	95	0	172	24	10	41	24	1.86
141045--141069	2	12.5	2	100	0	50	52	0	0	48	1.00
142378--142862	133	3.6	135	88	4	716	24	22	17	34	1.96
142378--142862	267	1.8	266	88	4	744	24	22	17	34	1.96
143829--143876	13	3.6	13	83	5	60	4	10	0	85	0.73
143822--143881	14	4.5	14	78	21	67	6	15	0	78	0.95
149408--149709	150	2.0	149	97	2	552	32	16	18	31	1.94
149668--149749	22	4.0	22	71	20	88	19	41	26	12	1.87
149674--149747	37	2.0	37	91	0	121	20	39	27	13	1.90
149696--149725	15	2.0	15	100	0	60	26	33	26	13	1.93
150977--151024	19	2.5	20	82	3	62	52	6	12	29	1.63
152272--152340	30	2.2	30	80	15	77	34	5	15	43	1.71
152430--152508	21	4.0	21	73	18	89	20	39	27	12	1.89
152436--152507	36	2.0	36	91	0	117	20	37	27	13	1.91
152457--152486	15	2.0	15	100	0	60	26	33	26	13	1.93
152534--152575	20	2.1	20	100	0	84	14	42	28	14	1.84
152612--152653	21	2.0	21	95	0	75	23	21	28	26	1.99
152936--153005	34	2.1	32	89	5	104	31	15	31	21	1.95
159786--159814	2	14.5	2	100	0	58	51	0	0	48	1.00
161794--161823	3	10.0	3	100	0	60	33	0	0	66	0.92
164327--164359	15	2.2	15	100	0	66	45	0	6	48	1.27
164818--164847	15	2.0	15	100	0	60	33	6	26	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172008--172034	2	13.5	2	100	0	54	0	48	0	51	1.00
177306--177458	77	2.0	77	94	1	272	31	8	18	41	1.80
177515--177542	12	2.3	12	100	0	56	21	17	21	39	1.93
183214--183255	15	2.7	15	78	14	50	40	2	11	45	1.54
183541--183575	17	2.1	17	100	0	70	37	34	17	11	1.85
187043--187111	30	2.3	30	95	5	122	26	7	40	26	1.81
190054--190095	22	1.9	22	90	9	68	47	4	16	30	1.67
190054--190101	22	2.1	22	85	11	62	41	8	14	35	1.76
191388--191446	30	2.0	30	93	6	102	35	3	16	44	1.65
191542--191613	36	2.0	36	91	0	117	23	33	27	15	1.95
191563--191592	15	2.0	15	100	0	60	26	33	26	13	1.93
191536--191615	21	4.1	21	75	18	91	22	36	27	13	1.92
191651--191690	20	2.0	20	100	0	80	15	40	30	15	1.87
191726--191768	21	2.0	21	95	0	77	23	20	27	27	1.99
191796--191835	20	1.9	22	90	10	66	37	40	10	12	1.77
191992--192061	34	2.1	32	86	5	95	31	15	30	22	1.95
194661--194719	30	2.0	30	93	6	102	35	3	16	44	1.65
194809--194874	21	3.1	21	91	4	105	21	39	27	12	1.88
194809--194874	22	3.0	22	93	2	107	21	39	27	12	1.88
194911--194948	20	1.9	20	100	0	76	13	42	28	15	1.85
194985--195027	21	2.0	21	95	0	77	23	20	27	27	1.99
195285--195355	34	2.2	32	84	5	88	30	15	30	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197458--197674	44	4.9	44	82	2	240	29	25	17	26	1.98

Tables:   1

The End!