Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004246.1 Hibiscus syriacus cultivar Beakdansim tig00009314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 187727
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Found at i:2321 original size:16 final size:16
Alignment explanation
Indices: 2300--2331 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2290 TTGAATATTT
*
2300 TTAATTGGGTTTAAAA
1 TTAATTGAGTTTAAAA
2316 TTAATTGAGTTTAAAA
1 TTAATTGAGTTTAAAA
2332 ATATTAATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.44
Consensus pattern (16 bp):
TTAATTGAGTTTAAAA
Found at i:12073 original size:44 final size:44
Alignment explanation
Indices: 12008--12129 Score: 181
Period size: 44 Copynumber: 2.8 Consensus size: 44
11998 AATATATCTA
* *
12008 TATCAGTGCTGAGGCATTTTAGTATTAGTGCTAATGCACTTCTG
1 TATCAGTGCTGAGGCACTTTAGTATTAATGCTAATGCACTTCTG
* * *
12052 TATCAGTGATGAGGTACTTTAGTATTAATGCTGATGCACTTCTG
1 TATCAGTGCTGAGGCACTTTAGTATTAATGCTAATGCACTTCTG
* *
12096 TATCAGTGCTGAGGCACTTTAATATCAATGCTAA
1 TATCAGTGCTGAGGCACTTTAGTATTAATGCTAA
12130 GGCATTTTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 68 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (44 bp):
TATCAGTGCTGAGGCACTTTAGTATTAATGCTAATGCACTTCTG
Found at i:12121 original size:22 final size:22
Alignment explanation
Indices: 12008--12133 Score: 112
Period size: 22 Copynumber: 5.7 Consensus size: 22
11998 AATATATCTA
*
12008 TATCAGTGCTGAGGCATTTTAG
1 TATCAGTGCTGAGGCACTTTAG
* * *
12030 TATTAGTGCTAATGCACTTCT-G
1 TATCAGTGCTGAGGCACTT-TAG
* *
12052 TATCAGTGATGAGGTACTTTAG
1 TATCAGTGCTGAGGCACTTTAG
* * *
12074 TATTAATGCTGATGCACTTCT-G
1 TATCAGTGCTGAGGCACTT-TAG
*
12096 TATCAGTGCTGAGGCACTTTAA
1 TATCAGTGCTGAGGCACTTTAG
* *
12118 TATCAATGCTAAGGCA
1 TATCAGTGCTGAGGCA
12134 TTTTCATTAA
Statistics
Matches: 80, Mismatches: 20, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
21 2 0.03
22 76 0.95
23 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (22 bp):
TATCAGTGCTGAGGCACTTTAG
Found at i:17083 original size:25 final size:25
Alignment explanation
Indices: 17046--17094 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
17036 AATTTATTTT
*
17046 TTCTCTAAATTTTATAAATTCGTCC
1 TTCTCTAAATTTTAGAAATTCGTCC
*
17071 TTCT-TAAATTTTTAGAAGTTCGTC
1 TTCTCTAAA-TTTTAGAAATTCGTC
17095 TCTTGACAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (25 bp):
TTCTCTAAATTTTAGAAATTCGTCC
Found at i:18529 original size:45 final size:45
Alignment explanation
Indices: 18465--18562 Score: 187
Period size: 45 Copynumber: 2.2 Consensus size: 45
18455 TTGATTCTCT
*
18465 GAAAACTTGTCTGCAAACCAAGTAATTATGAAATAAATAAAATAA
1 GAAAACTTGTCTGCAAACCAAGTAATTAAGAAATAAATAAAATAA
18510 GAAAACTTGTCTGCAAACCAAGTAATTAAGAAATAAATAAAATAA
1 GAAAACTTGTCTGCAAACCAAGTAATTAAGAAATAAATAAAATAA
18555 GAAAACTT
1 GAAAACTT
18563 ATCAGATGCC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.23
Consensus pattern (45 bp):
GAAAACTTGTCTGCAAACCAAGTAATTAAGAAATAAATAAAATAA
Found at i:18728 original size:40 final size:40
Alignment explanation
Indices: 18673--18759 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
18663 CAATCTAGGT
*
18673 ATGTTTTTCCAGTTTAGTACCTAACATTTATTTCGTTTTA
1 ATGTTTTTACAGTTTAGTACCTAACATTTATTTCGTTTTA
18713 ATGTTTTTACAGTTTAGTACCTAACATTTATTTCGTTTTA
1 ATGTTTTTACAGTTTAGTACCTAACATTTATTTCGTTTTA
18753 AT-TTTTT
1 ATGTTTTT
18760 GTTCCATTAC
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 5 0.11
40 41 0.89
ACGTcount: A:0.23, C:0.13, G:0.09, T:0.55
Consensus pattern (40 bp):
ATGTTTTTACAGTTTAGTACCTAACATTTATTTCGTTTTA
Found at i:21474 original size:20 final size:20
Alignment explanation
Indices: 21435--21480 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
21425 TTGTTTTTAA
*
21435 TAAATTTTTATCTATGAAAT
1 TAAATTTTTATCTATAAAAT
* *
21455 TAAATTTTTATTTTTAAAAT
1 TAAATTTTTATCTATAAAAT
*
21475 AAAATT
1 TAAATT
21481 ATAAAAGAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
TAAATTTTTATCTATAAAAT
Found at i:26626 original size:28 final size:28
Alignment explanation
Indices: 26594--26649 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
26584 TTTAATTCAT
*
26594 CCACGTCATAACGCAGTTAAAAAGTTAA
1 CCACGCCATAACGCAGTTAAAAAGTTAA
*
26622 CCACGCCATAACGCGGTTAAAAAGTTAA
1 CCACGCCATAACGCAGTTAAAAAGTTAA
26650 TGGAAAAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.23, G:0.16, T:0.20
Consensus pattern (28 bp):
CCACGCCATAACGCAGTTAAAAAGTTAA
Found at i:27681 original size:20 final size:20
Alignment explanation
Indices: 27653--27702 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
27643 TAACTCAGAT
*
27653 GTATCGATACTGACCTCTAA
1 GTATCGATACCGACCTCTAA
* *
27673 GTATTGATACCGACCTCTAG
1 GTATCGATACCGACCTCTAA
*
27693 GTATCAATAC
1 GTATCGATAC
27703 TAACTGGATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACCGACCTCTAA
Found at i:30441 original size:25 final size:26
Alignment explanation
Indices: 30407--30463 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
30397 ATATTTTTAA
* *
30407 TAAATTAAAAT-AAATTATATATTTT
1 TAAATGAAAATAAAATTAAATATTTT
30432 TAAATGAAAATAAAAATTAAATATTTT
1 TAAATGAAAAT-AAAATTAAATATTTT
30459 TAAAT
1 TAAAT
30464 TAAGTTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 10 0.36
27 18 0.64
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
TAAATGAAAATAAAATTAAATATTTT
Found at i:30498 original size:25 final size:27
Alignment explanation
Indices: 30450--30507 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
30440 AATAAAAATT
* **
30450 AAATATTTTTAAATTAAGTTAATAGTA
1 AAATATATTTAAATTAAGTTAATACAA
30477 AAATATATTT-AA-TAAGTTAATACAA
1 AAATATATTTAAATTAAGTTAATACAA
30502 AAATAT
1 AAATAT
30508 CTTAAGTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 17 0.61
26 2 0.07
27 9 0.32
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (27 bp):
AAATATATTTAAATTAAGTTAATACAA
Found at i:30805 original size:39 final size:39
Alignment explanation
Indices: 30762--30864 Score: 113
Period size: 39 Copynumber: 2.6 Consensus size: 39
30752 AAATAAATAT
*
30762 TTTAGAAAATTAATGTGAAATAATTTAAGAAATTAAGAA
1 TTTAGAAAGTTAATGTGAAATAATTTAAGAAATTAAGAA
* * *
30801 TTTAGAACGTT-ATGGTGTCAA-AATTTAAGAAATTAAGAT
1 TTTAGAAAGTTAAT-GTG-AAATAATTTAAGAAATTAAGAA
*
30840 TTTAGAATGTTAGA-GTGAAATAATT
1 TTTAGAAAGTTA-ATGTGAAATAATT
30865 CGAGGTTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
38 4 0.08
39 46 0.87
40 2 0.04
41 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.17, T:0.36
Consensus pattern (39 bp):
TTTAGAAAGTTAATGTGAAATAATTTAAGAAATTAAGAA
Found at i:31302 original size:31 final size:31
Alignment explanation
Indices: 31264--31330 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
31254 GATGACCACT
31264 TCTTAATTAAATAAAAAAGAAAGTGACAATA
1 TCTTAATTAAATAAAAAAGAAAGTGACAATA
*** *
31295 TCTTAATTAAATAAAAACTTAAGTGACCATA
1 TCTTAATTAAATAAAAAAGAAAGTGACAATA
31326 TCTTA
1 TCTTA
31331 TGTATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.31
Consensus pattern (31 bp):
TCTTAATTAAATAAAAAAGAAAGTGACAATA
Found at i:36877 original size:140 final size:140
Alignment explanation
Indices: 36625--36906 Score: 564
Period size: 140 Copynumber: 2.0 Consensus size: 140
36615 AAAAGAACAA
36625 GAAGAGAGAGTTGTTTGTTTTGTGCCATAATGTGAGTTATTTCTTTTGTAAGTGTTTGTATGGTA
1 GAAGAGAGAGTTGTTTGTTTTGTGCCATAATGTGAGTTATTTCTTTTGTAAGTGTTTGTATGGTA
36690 GCGGGAGAAAAGAGAGGGAAGATAACCAAGCAATAACTCAACAAAGCTTGCTTTCAATATCTTTA
66 GCGGGAGAAAAGAGAGGGAAGATAACCAAGCAATAACTCAACAAAGCTTGCTTTCAATATCTTTA
36755 AGAATTCAAC
131 AGAATTCAAC
36765 GAAGAGAGAGTTGTTTGTTTTGTGCCATAATGTGAGTTATTTCTTTTGTAAGTGTTTGTATGGTA
1 GAAGAGAGAGTTGTTTGTTTTGTGCCATAATGTGAGTTATTTCTTTTGTAAGTGTTTGTATGGTA
36830 GCGGGAGAAAAGAGAGGGAAGATAACCAAGCAATAACTCAACAAAGCTTGCTTTCAATATCTTTA
66 GCGGGAGAAAAGAGAGGGAAGATAACCAAGCAATAACTCAACAAAGCTTGCTTTCAATATCTTTA
36895 AGAATTCAAC
131 AGAATTCAAC
36905 GA
1 GA
36907 GGGAAGAAGA
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 142 1.00
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (140 bp):
GAAGAGAGAGTTGTTTGTTTTGTGCCATAATGTGAGTTATTTCTTTTGTAAGTGTTTGTATGGTA
GCGGGAGAAAAGAGAGGGAAGATAACCAAGCAATAACTCAACAAAGCTTGCTTTCAATATCTTTA
AGAATTCAAC
Found at i:38882 original size:138 final size:136
Alignment explanation
Indices: 38680--39017 Score: 333
Period size: 138 Copynumber: 2.5 Consensus size: 136
38670 ATATCGATCT
* * * * * * *
38680 CTTCCAGAAGGG-AGTAGGCAGGATAACCTAATCTTACGTCGAGTGCTCTAACATGTGAAATAGG
1 CTTCCAG-AGGGAAGTAGGCAGGATGACCTGATCTTAC-ACGAGCGCTCCAACGTGTGGAATAGG
* * * *
38744 CATGCT-ATTCATGTTTCACTCCAAGCGCTTCAACGTTG-GGAGTAGGTAGGGGAGACAAAGTTT
64 CATGCTGATTCA-ATATCACGCCAAGCGCTTCAAC-TTGTGGAGTAGGTAGGGGAGACAAAGTTC
*
38807 ATGCCGAGTG
127 ATGCCGAGCG
* * * *
38817 TTTCCAGAGAGTAAGTAGGCAGGATGACATGATCTTACAACGAGCGCTCCAACGTGTGGAGTAGG
1 CTTCCAGAG-GGAAGTAGGCAGGATGACCTGATCTTAC-ACGAGCGCTCCAACGTGTGGAATAGG
* * * * * * * *
38882 CATGGTGCTTTAATATCACGCCAAGCGTTTCAACTTGTGGGGTAGGTAGGGTAGATAGAGTTCAT
64 CATGCTGATTCAATATCACGCCAAGCGCTTCAACTTGTGGAGTAGGTAGGGGAGACAAAGTTCAT
*
38947 GCTGAGCG
129 GCCGAGCG
* *
38955 CTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCTGAGCGC-CCTAACGTGTGGAATAG
1 CTTCCAGAGGGAAGTAGGCAGGATGACCTGATCTTACAC-GAGCGCTCC-AACGTGTGGAATAG
39018 ACAAGGTGAA
Statistics
Matches: 163, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
136 5 0.03
137 54 0.33
138 101 0.62
139 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (136 bp):
CTTCCAGAGGGAAGTAGGCAGGATGACCTGATCTTACACGAGCGCTCCAACGTGTGGAATAGGCA
TGCTGATTCAATATCACGCCAAGCGCTTCAACTTGTGGAGTAGGTAGGGGAGACAAAGTTCATGC
CGAGCG
Found at i:43445 original size:15 final size:16
Alignment explanation
Indices: 43425--43459 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
43415 CCTTTAAAAG
*
43425 TTAACAATACA-TTTT
1 TTAACAACACAGTTTT
43440 TTAACAACACAGTTTT
1 TTAACAACACAGTTTT
43456 TTAA
1 TTAA
43460 AATTATTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.40, C:0.14, G:0.03, T:0.43
Consensus pattern (16 bp):
TTAACAACACAGTTTT
Found at i:48007 original size:16 final size:17
Alignment explanation
Indices: 47976--48008 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
47966 TATGCGGAGG
*
47976 ATTGATAGATTATGGGT
1 ATTGAAAGATTATGGGT
47993 ATTGAAAGA-TATGGGT
1 ATTGAAAGATTATGGGT
48009 GAACTTTCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.36
Consensus pattern (17 bp):
ATTGAAAGATTATGGGT
Found at i:50840 original size:51 final size:51
Alignment explanation
Indices: 50764--50866 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
50754 ATGGTCCTTC
* *
50764 TGATCACATAGATGCCACTGATACTAATATTGTTGTTAATTTTGTTTCTAA
1 TGATCACATAGATGCCACTGATACTAATATTGTTGTTAATTCTGTCTCTAA
*
50815 TGATCACATAGATGCCACTGATACTAATGTTGTTGTTAATTCTGTCTCTAA
1 TGATCACATAGATGCCACTGATACTAATATTGTTGTTAATTCTGTCTCTAA
50866 T
1 T
50867 AAACCTCCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.42
Consensus pattern (51 bp):
TGATCACATAGATGCCACTGATACTAATATTGTTGTTAATTCTGTCTCTAA
Found at i:57194 original size:14 final size:14
Alignment explanation
Indices: 57175--57204 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
57165 TATATCTTGT
57175 CACTGGCTACTAGA
1 CACTGGCTACTAGA
*
57189 CACTGGCTGCTAGA
1 CACTGGCTACTAGA
57203 CA
1 CA
57205 ATTGTATCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (14 bp):
CACTGGCTACTAGA
Found at i:63666 original size:77 final size:76
Alignment explanation
Indices: 63568--64163 Score: 660
Period size: 77 Copynumber: 7.7 Consensus size: 76
63558 TATAAGAAAT
* * * * * * *
63568 ATGGTTGCGCCTAA-AATTGTCATGGTTCATTAAGAAACATGTTGCGATTTAGAATGTTAAAATT
1 ATGGTTGCGCCCAAGAA-TGTCATGGTTCACTAAGAAATAAGTTGTGATCTAGAATGTTAATATT
63632 TTTATTAATAAA
65 TTTATTAATAAA
* * * *
63644 ATAGGTTGCGCCCAAGAATGTCATTGTTCACTAAGAAATAAGTTGTGATCTATAATGTTCATAAT
1 AT-GGTTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTGATCTAGAATGTTAATATT
63709 TTTATTAATAAA
65 TTTATTAATAAA
* * * * *
63721 ATGGGTTACGTCTAAGAATGTCATGGTTCACTAAGAAATAAGTTGCGATAT-GAAATGTTAATAT
1 AT-GGTTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTGATCTAG-AATGTTAATAT
63785 TTTTATTAATAAA
64 TTTTATTAATAAA
* * * *
63798 ATGAGTTGTGCCTAAGAATGTCATAGTTCACTAAGAAATATGTTGTGATCT-GAAATGTTAATAT
1 ATG-GTTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTGATCTAG-AATGTTAATAT
63862 TTTTATTAATAAA
64 TTTTATTAATAAA
* * * * * * *
63875 ATGAGGTGTGCTCAAGAATATCATGGTTCACTAAGAAATAGGTTGCGATCTGGAATGTTAATATT
1 ATG-GTTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTGATCTAGAATGTTAATATT
*
63940 TTTATTTATAAA
65 TTTATTAATAAA
* * *
63952 ATGATTTGCACCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTTATCTAGAATGTTAATATA
1 ATG-GTTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTGATCTAGAATGTTAATAT-
64017 TTTT-TTAATAAA
64 TTTTATTAATAAA
* * * *
64029 ATGGATTGCGCCCAAGAATGTCATGGTTCACTAAAAAATAGGTTGTGATATGGAATGTTAATATT
1 ATGG-TTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTGATCTAGAATGTTAATATT
64094 TTTATTAATAAA
65 TTTATTAATAAA
* * ** * * * * *
64106 ATGGGTGACACATAAAAATCTTATGGTTCACTAAGAAATCAAGTTGCGATCTGGAATG
1 ATGGTTG-CGCCCAAGAATGTCATGGTTCACTAAGAAAT-AAGTTGTGATCTAGAATG
64164 CTATTTTTCT
Statistics
Matches: 445, Mismatches: 65, Indels: 18
0.84 0.12 0.03
Matches are distributed among these distances:
76 9 0.02
77 414 0.93
78 22 0.05
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (76 bp):
ATGGTTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGTGATCTAGAATGTTAATATTT
TTATTAATAAA
Found at i:63805 original size:40 final size:40
Alignment explanation
Indices: 63756--63884 Score: 106
Period size: 40 Copynumber: 3.3 Consensus size: 40
63746 GTTCACTAAG
* *
63756 AAATAAGTTGCGATATGAAATGTTAATATTTTTATTAATA
1 AAATGAGTTGTGATATGAAATGTTAATATTTTTATTAATA
* * * * * * *
63796 AAATGAGTTGTGCCTAAG-AATG-TCATA-GTTCACTAA-G
1 AAATGAGTTGTG-ATATGAAATGTTAATATTTTTATTAATA
*
63833 AAAT-ATGTTGTGATCTGAAATGTTAATATTTTTATTAATA
1 AAATGA-GTTGTGATATGAAATGTTAATATTTTTATTAATA
*
63873 AAATGAGGTGTG
1 AAATGAGTTGTG
63885 CTCAAGAATA
Statistics
Matches: 64, Mismatches: 18, Indels: 14
0.67 0.19 0.15
Matches are distributed among these distances:
36 3 0.05
37 14 0.22
38 10 0.16
39 10 0.16
40 23 0.36
41 4 0.06
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.39
Consensus pattern (40 bp):
AAATGAGTTGTGATATGAAATGTTAATATTTTTATTAATA
Found at i:64287 original size:20 final size:20
Alignment explanation
Indices: 64262--64299 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
64252 ATAAGGCTGC
*
64262 AAAGTATCGATATTTTTATA
1 AAAGTATCGATACTTTTATA
64282 AAAGTATCGATACTTTTA
1 AAAGTATCGATACTTTTA
64300 AATTTGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (20 bp):
AAAGTATCGATACTTTTATA
Found at i:64365 original size:19 final size:20
Alignment explanation
Indices: 64341--64380 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
64331 TTTTTTTAAA
64341 TTTC-AAAGCATCGACACTT
1 TTTCAAAAGCATCGACACTT
* *
64360 TTTCAAAAGTATCGATACTT
1 TTTCAAAAGCATCGACACTT
64380 T
1 T
64381 CGAATTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (20 bp):
TTTCAAAAGCATCGACACTT
Found at i:64500 original size:154 final size:157
Alignment explanation
Indices: 64202--64535 Score: 387
Period size: 154 Copynumber: 2.1 Consensus size: 157
64192 GTATGTATAC
* * *
64202 TTTTCTAAAAATATCGATACTTTAGAATTTAAAGAAATATATGGAAAATGATAAGGCTGCAAAGT
1 TTTTC-AAAAGTATCGATACTTTAGAATTTAAAGAAATATATAGAAAATGAGAAGGCTGCAAAGT
** * * *
64267 ATCGATATTTTTATAAAAGTATCGATACTTTTAAATTTGAAAGTTAAAATATAATTTTTTTCCAT
65 ATAAATATTTTTACAAAAGTATCGATACTTTTAAATTAGAAAGTTAAAATATAATTATTTTCCAT
64332 TTTTTTAAATTTC-AAAGCATCGACACT
130 TTTTTTAAATTTCAAAAGCATCGACACT
* *
64359 TTTTCAAAAGTATCGATACTTTCGAATTTAAAGAAA-A-ATAGAAAATGAGAATG-TGTCAAAGT
1 TTTTCAAAAGTATCGATACTTTAGAATTTAAAGAAATATATAGAAAATGAGAAGGCTG-CAAAGT
* * *
64421 ATAAATATTTTTCCAAAAGTATTGATACTTTTAACTTAGAAAGTT-AAA-AT-ATTATTTTCCAT
65 ATAAATATTTTTACAAAAGTATCGATACTTTTAAATTAGAAAGTTAAAATATAATTATTTTCCA-
* * *
64483 GTTTTCTTTTAAA-TTCAAAAGTATCGATATT
129 --TTT-TTTTAAATTTCAAAAGCATCGACACT
* * *
64514 TTTTTAGAAGTATCAATACTTT
1 TTTTCAAAAGTATCGATACTTT
64536 TAAATTCGAA
Statistics
Matches: 152, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
151 10 0.07
152 2 0.01
153 5 0.03
154 63 0.41
155 38 0.25
156 29 0.19
157 5 0.03
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (157 bp):
TTTTCAAAAGTATCGATACTTTAGAATTTAAAGAAATATATAGAAAATGAGAAGGCTGCAAAGTA
TAAATATTTTTACAAAAGTATCGATACTTTTAAATTAGAAAGTTAAAATATAATTATTTTCCATT
TTTTTAAATTTCAAAAGCATCGACACT
Found at i:64577 original size:84 final size:84
Alignment explanation
Indices: 64445--64600 Score: 208
Period size: 84 Copynumber: 1.9 Consensus size: 84
64435 AAAAGTATTG
* **
64445 ATACTTTTAACTTAGAAAGTTAAAATATTATTTTCCATGTTTTCTTTTAAATTC-AAAAGTATCG
1 ATACTTTTAAATTAGAAAGTTAAAATATTATTTTCCATAATTTCTTTTAAATTCTAAAA-TATCG
64509 ATATTTTTTTAGAAGTATCA
65 ATATTTTTTTAGAAGTATCA
* *** *
64529 ATACTTTTAAATTCGAAAGTTAAAAATATTATTTTTTTTAATTT-TTTTAAATTCTAAAATATGG
1 ATACTTTTAAATTAGAAAGTT-AAAATATTATTTTCCATAATTTCTTTTAAATTCTAAAATATCG
64593 ATATTTTT
65 ATATTTTT
64601 AAAGCTTTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
84 41 0.66
85 21 0.34
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (84 bp):
ATACTTTTAAATTAGAAAGTTAAAATATTATTTTCCATAATTTCTTTTAAATTCTAAAATATCGA
TATTTTTTTAGAAGTATCA
Found at i:64712 original size:6 final size:6
Alignment explanation
Indices: 64696--64763 Score: 111
Period size: 6 Copynumber: 11.5 Consensus size: 6
64686 AAATAATCAA
* *
64696 AATTCT GATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTCC
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT
64744 AATTCT AATTCT AATT-T AAT
1 AATTCT AATTCT AATTCT AAT
64764 GAATATCATC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
5 4 0.07
6 54 0.93
ACGTcount: A:0.34, C:0.16, G:0.01, T:0.49
Consensus pattern (6 bp):
AATTCT
Found at i:66039 original size:36 final size:38
Alignment explanation
Indices: 65953--66043 Score: 123
Period size: 39 Copynumber: 2.4 Consensus size: 38
65943 AGATGAGTTT
* *
65953 AATGTTAAGGTTAACAAATTATAATAGTTGACCTCATAT
1 AATGTTAAGGTTAACAAATTATAATAGTCGA-CTCATAG
* *
65992 AATGTTAAGGTTAACAGATTATAATAGTCGA-TC-TGG
1 AATGTTAAGGTTAACAAATTATAATAGTCGACTCATAG
66028 AATGTTAAGGTTAACA
1 AATGTTAAGGTTAACA
66044 TTCTTGTGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
36 17 0.35
37 2 0.04
39 29 0.60
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.34
Consensus pattern (38 bp):
AATGTTAAGGTTAACAAATTATAATAGTCGACTCATAG
Found at i:66325 original size:76 final size:76
Alignment explanation
Indices: 66060--66352 Score: 327
Period size: 77 Copynumber: 3.8 Consensus size: 76
66050 TGTGAAACCT
* * * * * ** *
66060 ATTTTATCAATAAAAATATTAGCATTCTAGATCACAACCTATTTATTAGTGAATTATGATATTCT
1 ATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTTAGTGAACCATGACATTCT
***
66125 TGGGATTAACCC
66 TGGG-CGCACCC
* * * *
66137 ATTTTATTAATAAAAGTATTAACATTTCATATCGCAACCTATTTCTTAGTGAACCATGACATGCT
1 ATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTTAGTGAACCATGACATTCT
**
66202 TGGGCGCAACGT
66 TGGGCGC-ACCC
* ** * *
66214 ATTTTATTAATAAAAATATTAACATTCCGGT-TCACAATTTATTTTTTAGTAAACCATGACATTC
1 ATTTTATTAATAAAAATATTAACATTCC-ATATCACAACCTATTTCTTAGTGAACCATGACATTC
66278 TTGGGCGCACCC
65 TTGGGCGCACCC
* * *
66290 ATTTTATTAATAAAAATATTAATATTCCATATCACAACTTGTTTCTTAGTGAACCATGACATT
1 ATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTTAGTGAACCATGACATT
66353 TTTAGGCTCA
Statistics
Matches: 179, Mismatches: 34, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
75 1 0.01
76 57 0.32
77 120 0.67
78 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (76 bp):
ATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTTAGTGAACCATGACATTCT
TGGGCGCACCC
Found at i:66350 original size:153 final size:154
Alignment explanation
Indices: 66059--66351 Score: 390
Period size: 153 Copynumber: 1.9 Consensus size: 154
66049 GTGTGAAACC
* * * ** *
66059 TATTTTATCAATAAAAATATTAGCATTCTAGATCACAACCTATTTATTAGTGAATTATGATATTC
1 TATTTTATCAATAAAAATATTAACATTCCAGATCACAACCTATTTATTAGTAAACCATGACATTC
** * * *
66124 TTGGGATTAACCCATTTTATTAATAAAAGTATTAACATTTCATATCGCAACCTATTTCTTAGTGA
66 TTGGGACGAACCCATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTTAGTGA
66189 ACCATGACATGCTTGGGCGCAACG
131 ACCATGACATGCTTGGGCGCAACG
* * * ** *
66213 TATTTTATTAATAAAAATATTAACATTCCGGTTCACAATTTATTTTTTAGTAAACCATGACATTC
1 TATTTTATCAATAAAAATATTAACATTCCAGATCACAACCTATTTATTAGTAAACCATGACATTC
* * * *
66278 TTGGG-CGCACCCATTTTATTAATAAAAATATTAATATTCCATATCACAACTTGTTTCTTAGTGA
66 TTGGGACGAACCCATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTTAGTGA
66342 ACCATGACAT
131 ACCATGACAT
66352 TTTTAGGCTC
Statistics
Matches: 118, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
153 60 0.51
154 58 0.49
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (154 bp):
TATTTTATCAATAAAAATATTAACATTCCAGATCACAACCTATTTATTAGTAAACCATGACATTC
TTGGGACGAACCCATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTTAGTGA
ACCATGACATGCTTGGGCGCAACG
Found at i:67084 original size:42 final size:42
Alignment explanation
Indices: 67025--67108 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
67015 CGTTGTTAAC
67025 TCAAAATAGTTTAAAAGCGCTTGGAAAAACCTAACTCGAATT
1 TCAAAATAGTTTAAAAGCGCTTGGAAAAACCTAACTCGAATT
*
67067 TCAAAATAGTTTAAAAGCGCTTGGAAAAACCTAACTTGAATT
1 TCAAAATAGTTTAAAAGCGCTTGGAAAAACCTAACTCGAATT
67109 ATACTTTCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.27
Consensus pattern (42 bp):
TCAAAATAGTTTAAAAGCGCTTGGAAAAACCTAACTCGAATT
Found at i:71509 original size:21 final size:21
Alignment explanation
Indices: 71483--71584 Score: 66
Period size: 22 Copynumber: 4.8 Consensus size: 21
71473 CAGAACCCGT
*
71483 GGGGGGTATCGATTCCCCTAA
1 GGGGGGAATCGATTCCCCTAA
*
71504 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGATTCCCC-T-AA
* * * *
71527 -AGGGAAATCGGTTCCTCTTCAA
1 GGGGGGAATCGATTCC-CCT-AA
* *
71549 AGGGGGAATCGGTTCCCCT-A
1 GGGGGGAATCGATTCCCCTAA
*
71569 -GGGGGTATCGATTCCC
1 GGGGGGAATCGATTCCC
71585 TCTGCACCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
19 14 0.21
20 1 0.01
21 16 0.24
22 20 0.30
23 16 0.24
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.24
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTAA
Found at i:71562 original size:23 final size:23
Alignment explanation
Indices: 71484--71567 Score: 102
Period size: 22 Copynumber: 3.8 Consensus size: 23
71474 AGAACCCGTG
* * *
71484 GGGGGTATCGATTCCCC-T-AAG
1 GGGGGAATCGGTTCCCCTTCAAA
71505 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
* *
71528 -GGGAAATCGGTTCCTCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
71550 GGGGGAATCGGTTCCCCT
1 GGGGGAATCGGTTCCCCT
71568 AGGGGGTATC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
21 15 0.28
22 21 0.40
23 17 0.32
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (23 bp):
GGGGGAATCGGTTCCCCTTCAAA
Found at i:76807 original size:56 final size:56
Alignment explanation
Indices: 76746--76945 Score: 294
Period size: 56 Copynumber: 3.6 Consensus size: 56
76736 CAGGGCTTCA
* *
76746 AAAAATAGGGGCCCCGAAATCTAATATATCTATCAGTTGTTGCCATTAATAAGCAT
1 AAAAATAGGGGCCCCGAAATCGAATATATCTATCAGTTGTTGCCATTAAGAAGCAT
* * *
76802 AAAAATAGGGGTCCTGAAATCGAGTATATCTATCAGTTGTTGCCATTAAGAAGCAT
1 AAAAATAGGGGCCCCGAAATCGAATATATCTATCAGTTGTTGCCATTAAGAAGCAT
* * * *
76858 AAAAATAAGGGCTCCGAAATCAAATATATCTATCAGTTGTTGCCATTAAGAAACAT
1 AAAAATAGGGGCCCCGAAATCGAATATATCTATCAGTTGTTGCCATTAAGAAGCAT
*
76914 AAAAATAGGGGTCCC-AGAATCGAATATATCTA
1 AAAAATAGGGGCCCCGA-AATCGAATATATCTA
76946 GAAAATAAGG
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
55 1 0.01
56 126 0.99
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (56 bp):
AAAAATAGGGGCCCCGAAATCGAATATATCTATCAGTTGTTGCCATTAAGAAGCAT
Found at i:79312 original size:3 final size:3
Alignment explanation
Indices: 79304--79354 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
79294 GATCTTTCGA
*
79304 ATT ATT ATT ATT -TT ATT ATT ATT ATT ATT TTT AATT ATT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
*
79348 ATA ATT A
1 ATT ATT A
79355 AATATTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:79326 original size:17 final size:16
Alignment explanation
Indices: 79303--79345 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
79293 TGATCTTTCG
79303 AATTATTATTATTTTAT
1 AATTATTATTATTTT-T
*
79320 TATTATTATTATTTTT
1 AATTATTATTATTTTT
79336 AATTATTATT
1 AATTATTATT
79346 TTATAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
AATTATTATTATTTTT
Found at i:84282 original size:31 final size:31
Alignment explanation
Indices: 84247--84316 Score: 140
Period size: 31 Copynumber: 2.3 Consensus size: 31
84237 TCCATGATAA
84247 TATTTGTTTAACTAATCATAATGATTAATGC
1 TATTTGTTTAACTAATCATAATGATTAATGC
84278 TATTTGTTTAACTAATCATAATGATTAATGC
1 TATTTGTTTAACTAATCATAATGATTAATGC
84309 TATTTGTT
1 TATTTGTT
84317 ATTCATCATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.49
Consensus pattern (31 bp):
TATTTGTTTAACTAATCATAATGATTAATGC
Found at i:86900 original size:19 final size:19
Alignment explanation
Indices: 86876--86921 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
86866 GAGAGAGAAA
*
86876 TACTACAAGTATTTATTAC
1 TACTACAAATATTTATTAC
86895 TACTACAAATATTTATTAC
1 TACTACAAATATTTATTAC
86914 TACTACAA
1 TACTACAA
86922 TAATTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (19 bp):
TACTACAAATATTTATTAC
Found at i:86927 original size:19 final size:19
Alignment explanation
Indices: 86876--86927 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
86866 GAGAGAGAAA
86876 TACTACAAGT-ATTTATTAC
1 TACTACAA-TAATTTATTAC
86895 TACTACAA-ATATTTATTAC
1 TACTACAATA-ATTTATTAC
86914 TACTACAATAATTT
1 TACTACAATAATTT
86928 TTTTTTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 29 0.97
20 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.02, T:0.42
Consensus pattern (19 bp):
TACTACAATAATTTATTAC
Found at i:87136 original size:2 final size:2
Alignment explanation
Indices: 87129--87174 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
87119 TATCATTGTC
87129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87171 AT AT
1 AT AT
87175 TAACAAGTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87369 original size:17 final size:17
Alignment explanation
Indices: 87349--87381 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
87339 ATATTTATTT
87349 ATAT-AAAATATAATATA
1 ATATCAAAA-ATAATATA
87366 ATATCAAAAATAATAT
1 ATATCAAAAATAATAT
87382 TATGATCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
ATATCAAAAATAATATA
Found at i:87483 original size:17 final size:16
Alignment explanation
Indices: 87458--87493 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
87448 TTAAATATTA
*
87458 TTTTAAATAATTATAT
1 TTTTAAATAATAATAT
87474 TTTTATAATAATAATAT
1 TTTTA-AATAATAATAT
87491 TTT
1 TTT
87494 CACCTCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTTAAATAATAATAT
Found at i:89103 original size:20 final size:20
Alignment explanation
Indices: 89097--89195 Score: 171
Period size: 20 Copynumber: 5.0 Consensus size: 20
89087 CACAGTTTCC
*
89097 GAATTCGCAACTCGAATTTG
1 GAATTCGCAACACGAATTTG
*
89117 GAATTCGCAACTCGAATTTG
1 GAATTCGCAACACGAATTTG
*
89137 GAATTCGCAACTCGAATTTG
1 GAATTCGCAACACGAATTTG
89157 GAATTCGCAACACGAATTTG
1 GAATTCGCAACACGAATTTG
89177 GAATTCGCAACACGAATTT
1 GAATTCGCAACACGAATTT
89196 ACCAAATTCA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
20 78 1.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (20 bp):
GAATTCGCAACACGAATTTG
Found at i:89124 original size:40 final size:40
Alignment explanation
Indices: 89080--89195 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
89070 GAAAGCCAAT
* *
89080 TTCGCAACAC-AGTTTCCGAATTCGCAACTCGAATTTGGAA
1 TTCGCAACACGAATTT-GGAATTCGCAACTCGAATTTGGAA
*
89120 TTCGCAACTCGAATTTGGAATTCGCAACTCGAATTTGGAA
1 TTCGCAACACGAATTTGGAATTCGCAACTCGAATTTGGAA
*
89160 TTCGCAACACGAATTTGGAATTCGCAACACGAATTT
1 TTCGCAACACGAATTTGGAATTCGCAACTCGAATTT
89196 ACCAAATTCA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 66 0.94
41 4 0.06
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (40 bp):
TTCGCAACACGAATTTGGAATTCGCAACTCGAATTTGGAA
Found at i:89271 original size:22 final size:20
Alignment explanation
Indices: 89227--89277 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
89217 TTAAATTCGT
* *
89227 AACTCGAATTCGGATTTCGC
1 AACTCGAATTCGAATTTCAC
89247 AACTCGAATTCGCCAATTTCAC
1 AACTCGAATTCG--AATTTCAC
89269 AACTC-AATT
1 AACTCGAATT
89278 TTCGAAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 12 0.44
21 4 0.15
22 11 0.41
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (20 bp):
AACTCGAATTCGAATTTCAC
Found at i:93827 original size:15 final size:15
Alignment explanation
Indices: 93809--93837 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
93799 GTTTTAAATT
93809 TTAATTATTATTATA
1 TTAATTATTATTATA
93824 TTAATTATTATTAT
1 TTAATTATTATTAT
93838 TAGACTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTAATTATTATTATA
Found at i:100209 original size:20 final size:21
Alignment explanation
Indices: 100184--100222 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
100174 TATCATTGTG
100184 ACATCATACAAA-AGCTCTGA
1 ACATCATACAAAGAGCTCTGA
*
100204 ACATCATGCAAAGAGCTCT
1 ACATCATACAAAGAGCTCT
100223 CTGGTTGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.21
Consensus pattern (21 bp):
ACATCATACAAAGAGCTCTGA
Found at i:101316 original size:42 final size:42
Alignment explanation
Indices: 101269--101350 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
101259 CACGAATTTG
*
101269 TAAATCATTCGAGTCATCTGTAAGTCCTTT-GAGCATGATGTT
1 TAAATCATTCGAGTCATCTGTAAGT-CTTTCGAGCAAGATGTT
* * * *
101311 TAAATCCTTCGGGTCATTTGTCAGTCTTTCGAGCAAGATG
1 TAAATCATTCGAGTCATCTGTAAGTCTTTCGAGCAAGATG
101351 ATAAGTCCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 4 0.12
42 30 0.88
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (42 bp):
TAAATCATTCGAGTCATCTGTAAGTCTTTCGAGCAAGATGTT
Found at i:101594 original size:42 final size:42
Alignment explanation
Indices: 101518--101599 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
101508 CACGAATTTG
* * *
101518 TAAATCCTTCGGGTCATCTATAAGTCCTTTGAGCATGATGTT
1 TAAATCCTTCAGGACATCTATAAGTCCTTTGAGCAAGATGTT
* *
101560 TAAATCCTTCAGGACATCTGTCAGT-CTTTCGAGCAAGATG
1 TAAATCCTTCAGGACATCTATAAGTCCTTT-GAGCAAGATG
101600 ATAAGTCATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 4 0.12
42 30 0.88
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (42 bp):
TAAATCCTTCAGGACATCTATAAGTCCTTTGAGCAAGATGTT
Found at i:101845 original size:3 final size:3
Alignment explanation
Indices: 101839--101879 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
101829 ATATAATAAA
101839 TAT TAT TA- TAT TA- TAT T-T ATAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT T
101880 CTTAATAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 5 0.15
3 28 0.82
4 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:103327 original size:23 final size:23
Alignment explanation
Indices: 103284--103327 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
103274 TATTATATTA
* *
103284 ATTATTATTAGTAGTACTTTAGG
1 ATTATTATTAGTAATAATTTAGG
103307 ATTATTATT-GTACATAATTTA
1 ATTATTATTAGTA-ATAATTTA
103328 TACTTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (23 bp):
ATTATTATTAGTAATAATTTAGG
Found at i:106408 original size:3 final size:3
Alignment explanation
Indices: 106400--106438 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
106390 TCCAAAATTA
*
106400 ATT ATT ATT ATT AAGT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT AT
106439 CATCATCATC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:108326 original size:2 final size:2
Alignment explanation
Indices: 108319--108351 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
108309 TTTTGTTCTT
108319 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108352 TATTTTATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108579 original size:5 final size:5
Alignment explanation
Indices: 108569--108634 Score: 53
Period size: 5 Copynumber: 13.0 Consensus size: 5
108559 ATAGTAATAT
** * * *
108569 TTTTA TTTTA TTTTA TTTTTA TAATA TTTTA TTTT- TTTATT TTTTA TTCTG
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA
*
108620 TTTTA TTTAA TTTTA
1 TTTTA TTTTA TTTTA
108635 GTATTAATGA
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
4 3 0.06
5 36 0.77
6 8 0.17
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:108587 original size:16 final size:16
Alignment explanation
Indices: 108566--108616 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
108556 ATGATAGTAA
108566 TATTTTTATTTTATTT
1 TATTTTTATTTTATTT
**
108582 TATTTTTATAATATTT
1 TATTTTTATTTTATTT
108598 TATTTTT-TTATT-TTT
1 TATTTTTATT-TTATTT
108613 TATT
1 TATT
108617 CTGTTTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TATTTTTATTTTATTT
Found at i:108627 original size:25 final size:26
Alignment explanation
Indices: 108563--108612 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
108553 AAAATGATAG
108563 TAATATTTTTATTTTATTTTATTTTTA
1 TAATA-TTTTATTTTATTTTATTTTTA
108590 TAATATTTTA-TTT-TTTTATTTTT
1 TAATATTTTATTTTATTTTATTTTT
108613 TATTCTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.43
25 3 0.13
26 5 0.22
27 5 0.22
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (26 bp):
TAATATTTTATTTTATTTTATTTTTA
Found at i:112933 original size:2 final size:2
Alignment explanation
Indices: 112917--112949 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
112907 GTCTATATGC
112917 AT AT A- AT AT -T AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
112950 CTTAAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114138 original size:20 final size:21
Alignment explanation
Indices: 114113--114202 Score: 103
Period size: 21 Copynumber: 4.4 Consensus size: 21
114103 TCCCAATTCA
*
114113 CAATGCGAA-TAAGTAAATCG
1 CAATGCGAATTAAGAAAATCG
**
114133 CAATGCGAATTGGGAAAATCG
1 CAATGCGAATTAAGAAAATCG
*
114154 CAATGCGAA-TAAGTAAATCG
1 CAATGCGAATTAAGAAAATCG
* **
114174 CAACGCGAATTGGGAAAATCG
1 CAATGCGAATTAAGAAAATCG
114195 CAATGCGA
1 CAATGCGA
114203 TACTGACTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
20 25 0.44
21 32 0.56
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (21 bp):
CAATGCGAATTAAGAAAATCG
Found at i:114153 original size:21 final size:21
Alignment explanation
Indices: 114127--114202 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
114117 GCGAATAAGT
114127 AAATCGCAATGCGAATTGGGA
1 AAATCGCAATGCGAATTGGGA
** *
114148 AAATCGCAATGCGAA-TAAGT
1 AAATCGCAATGCGAATTGGGA
*
114168 AAATCGCAACGCGAATTGGGA
1 AAATCGCAATGCGAATTGGGA
114189 AAATCGCAATGCGA
1 AAATCGCAATGCGA
114203 TACTGACTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (21 bp):
AAATCGCAATGCGAATTGGGA
Found at i:114158 original size:41 final size:41
Alignment explanation
Indices: 114113--114202 Score: 171
Period size: 41 Copynumber: 2.2 Consensus size: 41
114103 TCCCAATTCA
*
114113 CAATGCGAATAAGTAAATCGCAATGCGAATTGGGAAAATCG
1 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCG
114154 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCG
1 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCG
114195 CAATGCGA
1 CAATGCGA
114203 TACTGACTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (41 bp):
CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCG
Found at i:114215 original size:41 final size:41
Alignment explanation
Indices: 114129--114263 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
114119 GAATAAGTAA
* * *
114129 ATCGCAATGCGAATTGGGAAAATCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
114170 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
114211 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
114252 TTCGCAACGCGA
1 ATCGCAACGCGA
114264 TACTGACTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:114216 original size:20 final size:20
Alignment explanation
Indices: 114191--114285 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
114181 AATTGGGAAA
*
114191 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
114211 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
114232 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
114252 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
114272 TTCGCAACGCGATA
1 ATCGCAACGCGATA
114286 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:114664 original size:14 final size:14
Alignment explanation
Indices: 114645--114680 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
114635 ATTGTTTAAT
114645 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
114659 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
114673 TGATTTGT
1 TGATTTGT
114681 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:114811 original size:19 final size:19
Alignment explanation
Indices: 114787--114853 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
114777 AAAAAGTACT
*
114787 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
114806 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
114820 ATCGCAACGCGAAAATG-AA
1 ATCGCAACGCG-AAATGAAA
114839 ATCGCAACGCGAAAT
1 ATCGCAACGCGAAAT
114854 TAAATTCGCG
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
18 4 0.10
19 20 0.50
20 1 0.03
ACGTcount: A:0.45, C:0.21, G:0.22, T:0.12
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:114880 original size:19 final size:19
Alignment explanation
Indices: 114858--115008 Score: 80
Period size: 19 Copynumber: 8.7 Consensus size: 19
114848 CGAAATTAAA
114858 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
114877 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
114892 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
114910 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
114924 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
114943 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
114958 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
114976 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
114995 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
115009 GAACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:114904 original size:33 final size:32
Alignment explanation
Indices: 114862--114988 Score: 193
Period size: 33 Copynumber: 3.9 Consensus size: 32
114852 ATTAAATTCG
114862 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
114895 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
114928 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
114961 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
114989 AGTAATTTCC
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.03
33 80 0.93
35 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:114940 original size:66 final size:66
Alignment explanation
Indices: 114855--114987 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
114845 ACGCGAAATT
*
114855 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
114920 G
66 G
*
114921 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
114986 G
66 G
114987 A
1 A
114988 TAGTAATTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:117294 original size:12 final size:12
Alignment explanation
Indices: 117277--117301 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
117267 TCTTCGGGGA
117277 CTTTTTCTTCTT
1 CTTTTTCTTCTT
117289 CTTTTTCTTCTT
1 CTTTTTCTTCTT
117301 C
1 C
117302 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:117510 original size:24 final size:24
Alignment explanation
Indices: 117476--117529 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
117466 CTGAAACATC
* *
117476 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
117500 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
117524 ATCAAA
1 ATCAAA
117530 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:118612 original size:20 final size:20
Alignment explanation
Indices: 118587--118664 Score: 147
Period size: 20 Copynumber: 3.9 Consensus size: 20
118577 ATTCATTTGA
118587 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
118607 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
118627 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
118647 CTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
118665 CGCAATGCGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.15
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:118707 original size:14 final size:16
Alignment explanation
Indices: 118687--118760 Score: 66
Period size: 19 Copynumber: 4.5 Consensus size: 16
118677 TGAAAATCGC
118687 ATTGCGATTTTC-TCG
1 ATTGCGATTTTCTTCG
118702 -TTGCGATTTTCATTTCG
1 ATTGCGATTTTC--TTCG
118719 CATTGCGATTTTCATTTCG
1 -ATTGCGATTTTC--TTCG
118738 CATTGCGATTTTC-TCG
1 -ATTGCGATTTTCTTCG
118754 -TTGCGAT
1 ATTGCGAT
118761 AGCCATTTCG
Statistics
Matches: 54, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
14 18 0.33
16 3 0.06
17 3 0.06
19 30 0.56
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (16 bp):
ATTGCGATTTTCTTCG
Found at i:118724 original size:19 final size:19
Alignment explanation
Indices: 118683--118750 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
118673 GAAATGAAAA
118683 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
118699 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
118716 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
118735 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
118751 TCGTTGCGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
14 11 0.23
16 3 0.06
17 3 0.06
19 30 0.64
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:120805 original size:20 final size:19
Alignment explanation
Indices: 120770--120825 Score: 85
Period size: 20 Copynumber: 2.9 Consensus size: 19
120760 GAAACTTAAA
120770 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
120789 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
*
120809 ATCGCAATGCGAAATGA
1 ATCGCAACGCGAAATGA
120826 AAATTGCAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:120872 original size:32 final size:33
Alignment explanation
Indices: 120809--120899 Score: 139
Period size: 32 Copynumber: 2.8 Consensus size: 33
120799 GGAAATGGCT
*
120809 ATCGCAATGCGAAATGAAAATTGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
120842 ATCGCAATGCAAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
120874 ATCACAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
120900 TGCAATTTGT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
32 28 0.54
33 24 0.46
ACGTcount: A:0.49, C:0.21, G:0.16, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:120935 original size:14 final size:14
Alignment explanation
Indices: 120916--120973 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
120906 TTGTGTTTCG
120916 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
120930 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
120946 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
120962 CGTTGCGATTTT
1 CGTTGCGATTTT
120974 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:120952 original size:32 final size:33
Alignment explanation
Indices: 120911--120989 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
120901 GCAATTTGTG
120911 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
120943 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
120976 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
120990 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 27 0.60
33 18 0.40
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:120988 original size:19 final size:17
Alignment explanation
Indices: 120911--120989 Score: 62
Period size: 14 Copynumber: 4.8 Consensus size: 17
120901 GCAATTTGTG
120911 TTTCGCGTTGCGATTT--
1 TTTCGC-TTGCGATTTCA
*
120927 TGTCG-TTGCGATTTCA
1 TTTCGCTTGCGATTTCA
120943 TTTCGCGTTGCGATTT--
1 TTTCGC-TTGCGATTTCA
*
120959 TGTCG-TTGCGATTTTCA
1 TTTCGCTTGCGA-TTTCA
120976 TTTCGCATTGCGAT
1 TTTCGC-TTGCGAT
120990 AGCCATTTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
14 15 0.30
15 3 0.06
16 12 0.24
17 4 0.08
18 10 0.20
19 6 0.12
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.47
Consensus pattern (17 bp):
TTTCGCTTGCGATTTCA
Found at i:121008 original size:20 final size:19
Alignment explanation
Indices: 120974--121028 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
120964 TTGCGATTTT
*
120974 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
120993 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
121013 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
121029 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:121527 original size:18 final size:18
Alignment explanation
Indices: 121501--121545 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
121491 GTCGATCAGA
*
121501 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
121519 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
121537 TGATGGCTC
1 TGATGGCTC
121546 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:122888 original size:20 final size:20
Alignment explanation
Indices: 122863--122900 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
122853 AATAGTTTCT
122863 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
122883 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
122901 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:123188 original size:21 final size:21
Alignment explanation
Indices: 123164--123206 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
123154 GATTTAGATA
123164 GACGGATTTCGCCGGAGATGG
1 GACGGATTTCGCCGGAGATGG
*
123185 GACGGATTTCGTCGGAGATGG
1 GACGGATTTCGCCGGAGATGG
123206 G
1 G
123207 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.16, G:0.44, T:0.21
Consensus pattern (21 bp):
GACGGATTTCGCCGGAGATGG
Found at i:123418 original size:20 final size:20
Alignment explanation
Indices: 123393--123486 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
123383 GATTATGTAT
123393 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
123413 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
123433 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
123454 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
123474 TATCGCATTGCGA
1 TATCGCGTTGCGA
123487 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:123487 original size:20 final size:20
Alignment explanation
Indices: 123373--123487 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
123363 CGCTTTGAAA
*
123373 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
123394 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
123414 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
123434 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
123455 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
123475 ATCGCATTGCGAT
1 ATCGCATTGCGAT
123488 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:123505 original size:21 final size:21
Alignment explanation
Indices: 123476--123568 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
123466 ATAGTCAGTA
123476 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
123497 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
123517 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
123538 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
123558 TCGCATTGCGA
1 TCGCATTGCGA
123569 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:123506 original size:41 final size:41
Alignment explanation
Indices: 123415--123549 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
123405 AAAGTCAGTA
* * * ** *
123415 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
123455 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
123497 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
123538 TCGCGTTGCGAT
1 TCGCGTTGCGAT
123550 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:123550 original size:41 final size:41
Alignment explanation
Indices: 123476--123568 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
123466 ATAGTCAGTA
123476 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
123517 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
123558 TCGCATTGCGA
1 TCGCATTGCGA
123569 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:127733 original size:25 final size:26
Alignment explanation
Indices: 127700--127764 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
127690 TAAAATTTTA
* *
127700 AATTCTTAATATTTT-TTATTTT-ATT
1 AATTTTTAATATTTTGATATTTTGA-T
127725 AATTTTTAATATTTTGATATTTTGAT
1 AATTTTTAATATTTTGATATTTTGAT
*
127751 -ATTTTTAAAATTTT
1 AATTTTTAATATTTT
127765 AATAAATTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 27 0.77
26 7 0.20
27 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (26 bp):
AATTTTTAATATTTTGATATTTTGAT
Found at i:127738 original size:70 final size:69
Alignment explanation
Indices: 127623--127757 Score: 166
Period size: 70 Copynumber: 1.9 Consensus size: 69
127613 TAATATTTTT
* *
127623 AAATTTTAAATTTTAATAATTTATAACTTTATCATTTTATATATTTTGTTATATTAATATTTTTA
1 AAATTTTAAATTTTAATAATTTATAACTTTATAATTTTATATATTTTGATATATTAATATTTTTA
127688 TTTA
66 TTTA
* * * * *
127692 AAATTTTAAATTCTTAAT-ATTTTTTATTTTATTAATTTT-TAATATTTTGATATTTTGATATTT
1 AAATTTTAAATT-TTAATAATTTATAACTTTA-TAATTTTAT-ATATTTTGATATATTAATATTT
127755 TTA
63 TTA
127758 AAATTTTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
69 23 0.41
70 33 0.59
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (69 bp):
AAATTTTAAATTTTAATAATTTATAACTTTATAATTTTATATATTTTGATATATTAATATTTTTA
TTTA
Found at i:127747 original size:16 final size:15
Alignment explanation
Indices: 127613--127765 Score: 71
Period size: 16 Copynumber: 9.7 Consensus size: 15
127603 CACATAAATA
*
127613 TAATATTTTTAAATTT
1 TAATA-TTTTATATTT
*
127629 TAA-ATTTTAATAATT
1 TAATATTTT-ATATTT
*
127644 T-ATAACTTTATCATTT
1 TAAT-ATTTTAT-ATTT
* *
127660 TATATATTTTGTTATAT
1 TA-ATATTTT-ATATTT
127677 TAATATTTT-TA-TT
1 TAATATTTTATATTT
* *
127690 TAAAATTTTAAATTCT
1 TAATATTTTATATT-T
*
127706 TAATATTTTTTATTT
1 TAATATTTTATATTT
*
127721 TATTAATTTTTAATATTT
1 TAAT-A-TTTT-ATATTT
*
127739 TGATATTTTGATATTTT
1 TAATATTTT-ATA-TTT
*
127756 TAAAATTTTA
1 TAATATTTTA
127766 ATAAATTCTT
Statistics
Matches: 103, Mismatches: 20, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
13 9 0.09
14 8 0.08
15 13 0.13
16 39 0.38
17 24 0.23
18 10 0.10
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (15 bp):
TAATATTTTATATTT
Found at i:127765 original size:33 final size:33
Alignment explanation
Indices: 127676--127768 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 33
127666 TTTTGTTATA
127676 TTAATATTTT-TA--TTTAAAATTTTAA-ATTC
1 TTAATATTTTATATTTTTAAAATTTTAATATTC
* * *
127705 TTAATATTTTTTATTTTATTAATTTTTAATATT-
1 TTAATATTTTATATTTT-TAAAATTTTAATATTC
*
127738 TTGATATTTTGATATTTTTAAAATTTTAATA
1 TTAATATTTT-ATATTTTTAAAATTTTAATA
127769 AATTCTTGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
29 10 0.19
30 2 0.04
32 2 0.04
33 29 0.56
34 9 0.17
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.62
Consensus pattern (33 bp):
TTAATATTTTATATTTTTAAAATTTTAATATTC
Found at i:128272 original size:42 final size:42
Alignment explanation
Indices: 128224--128334 Score: 143
Period size: 42 Copynumber: 2.6 Consensus size: 42
128214 TTCTTAATTA
* * *
128224 TAAAAAGTGACATTAAAAAAATTAGGGCTTCAATTATAAATG
1 TAAAAAGTGAGATTAAAAAAATTAGGGCATCAATTATAAAGG
*
128266 TAAAAAGTGAGATT-AAAAAATTAGAGGCATCACTTATAAAGG
1 TAAAAAGTGAGATTAAAAAAATTAG-GGCATCAATTATAAAGG
* * *
128308 TAGAAAGTAAGATTAAAAAGATTAGGG
1 TAAAAAGTGAGATTAAAAAAATTAGGG
128335 GCCATGTAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
41 10 0.17
42 41 0.68
43 9 0.15
ACGTcount: A:0.50, C:0.05, G:0.19, T:0.25
Consensus pattern (42 bp):
TAAAAAGTGAGATTAAAAAAATTAGGGCATCAATTATAAAGG
Found at i:130147 original size:23 final size:23
Alignment explanation
Indices: 130117--130197 Score: 117
Period size: 23 Copynumber: 3.5 Consensus size: 23
130107 TCGAGGGTTC
*
130117 TATGTGGTCCTTTGGGACAAAAT
1 TATGTGGTCCTTTAGGACAAAAT
*
130140 TATGTGGTCCTTTAGGAAAAAAT
1 TATGTGGTCCTTTAGGACAAAAT
**
130163 TATGTGGTCCTTTAGGACAAACC
1 TATGTGGTCCTTTAGGACAAAAT
*
130186 TATATGGTCCTT
1 TATGTGGTCCTT
130198 CGCAACAAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (23 bp):
TATGTGGTCCTTTAGGACAAAAT
Found at i:130205 original size:23 final size:23
Alignment explanation
Indices: 130179--130229 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
130169 GTCCTTTAGG
* *
130179 ACAAACCTATATGGTCCTTCGCA
1 ACAAACCTATATAGTCATTCGCA
* *
130202 ACAAACCTATGTAGTCATTCGGA
1 ACAAACCTATATAGTCATTCGCA
130225 ACAAA
1 ACAAA
130230 TATGTGGCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (23 bp):
ACAAACCTATATAGTCATTCGCA
Found at i:130355 original size:19 final size:19
Alignment explanation
Indices: 130331--130367 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
130321 ATGTTGGGCT
*
130331 AATTAAATAAATGGATATA
1 AATTAAACAAATGGATATA
*
130350 AATTAAACAAATTGATAT
1 AATTAAACAAATGGATAT
130368 GGAATGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (19 bp):
AATTAAACAAATGGATATA
Found at i:136031 original size:22 final size:23
Alignment explanation
Indices: 135979--136061 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
135969 GTCGAGGGTT
*
135979 CTATGTGGTCCTTCGGGACAAAA
1 CTATGTGGTCCTTCGGGACAAAC
* * *
136002 TTATGTGGTCATTCAGGAC-AAC
1 CTATGTGGTCCTTCGGGACAAAC
136024 CTATGTGGTCCTTCGGGACAAAC
1 CTATGTGGTCCTTCGGGACAAAC
136047 CTATGTGGTCCTTCG
1 CTATGTGGTCCTTCG
136062 AAATAAATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
22 18 0.35
23 34 0.65
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (23 bp):
CTATGTGGTCCTTCGGGACAAAC
Found at i:136074 original size:21 final size:22
Alignment explanation
Indices: 135979--136075 Score: 72
Period size: 23 Copynumber: 4.4 Consensus size: 22
135969 GTCGAGGGTT
**
135979 CTATGTGGTCCTTCGGGACAAAA
1 CTATGTGGTCCTTCGAAAC-AAA
* * * *
136002 TTATGTGGTCATTC-AGGACAAC
1 CTATGTGGTCCTTCGA-AACAAA
**
136024 CTATGTGGTCCTTCGGGACAAA
1 CTATGTGGTCCTTCGAAACAAA
*
136046 CCTATGTGGTCCTTCGAAATAAA
1 -CTATGTGGTCCTTCGAAACAAA
136069 -TATGTGG
1 CTATGTGG
136076 CACTTCGGTG
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
21 7 0.12
22 19 0.32
23 34 0.57
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (22 bp):
CTATGTGGTCCTTCGAAACAAA
Found at i:136196 original size:19 final size:19
Alignment explanation
Indices: 136172--136208 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
136162 ATGTTGGGCT
*
136172 AATTAAATAAATGGATATA
1 AATTAAACAAATGGATATA
*
136191 AATTAAACAAATTGATAT
1 AATTAAACAAATGGATAT
136209 TGAATGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (19 bp):
AATTAAACAAATGGATATA
Found at i:138140 original size:16 final size:18
Alignment explanation
Indices: 138109--138141 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
138099 ATTAATGTAC
138109 GAATCATTTATATTTTTT
1 GAATCATTTATATTTTTT
138127 GAAT-ATTT-TATTTTT
1 GAATCATTTATATTTTT
138142 AATAAGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.64
Consensus pattern (18 bp):
GAATCATTTATATTTTTT
Found at i:138816 original size:130 final size:130
Alignment explanation
Indices: 138612--138859 Score: 406
Period size: 130 Copynumber: 1.9 Consensus size: 130
138602 AATTTTCTTC
* *
138612 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
* ** *
138677 CTTGGTTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * *
138742 TAATTAGGTGGTGACATGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
*
138807 CCTAATTAAATGATTAATTTATTACATTCTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
138860 TATATAAATA
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 108 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (130 bp):
TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:139171 original size:3 final size:3
Alignment explanation
Indices: 139158--139186 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
139148 AAAATTTCTT
139158 CAA CAA C-A CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
139187 AACCCAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.66, C:0.34, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:143889 original size:35 final size:35
Alignment explanation
Indices: 143839--143914 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
143829 AATTGAATTT
* *
143839 AATTGAATTATTTTGGAATTTAGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
*
143874 AATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
143909 AATTGA
1 AATTGA
143915 GGACTGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.01, G:0.24, T:0.39
Consensus pattern (35 bp):
AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
Found at i:147574 original size:3 final size:3
Alignment explanation
Indices: 147566--147613 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
147556 ACCCCTTTTA
* *
147566 TAT TAT TAT TAT CGAT ATAT TAT TTT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
147612 TA
1 TA
147614 AATAAACTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.84
4 4 0.11
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:147586 original size:17 final size:15
Alignment explanation
Indices: 147564--147608 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
147554 CGACCCCTTT
147564 TATATTATTATTATCGA
1 TATATTATTATTAT--A
*
147581 TATATTATTTTTATA
1 TATATTATTATTATA
147596 T-TATTATTATTAT
1 TATATTATTATTAT
147609 TATTAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 11 0.42
15 2 0.08
17 13 0.50
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
TATATTATTATTATA
Found at i:147611 original size:17 final size:17
Alignment explanation
Indices: 147563--147613 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
147553 CCGACCCCTT
*
147563 TTATATTATTATTATCGA
1 TTATATTATTATTAT-TA
*
147581 -TATATTATTTTTA-TA
1 TTATATTATTATTATTA
147596 TTATTATTATTATTATTA
1 TTA-TATTATTATTATTA
147614 AATAAACTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
15 1 0.04
16 2 0.07
17 22 0.81
18 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:149604 original size:13 final size:13
Alignment explanation
Indices: 149586--149627 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
149576 AGTGTCATAA
149586 ATTTATGACGCGC
1 ATTTATGACGCGC
* *
149599 ATTTATGACACAC
1 ATTTATGACGCGC
149612 ATTTATGACGCGC
1 ATTTATGACGCGC
149625 ATT
1 ATT
149628 GAGCGTCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (13 bp):
ATTTATGACGCGC
Found at i:152891 original size:6 final size:6
Alignment explanation
Indices: 152864--152914 Score: 68
Period size: 6 Copynumber: 8.5 Consensus size: 6
152854 TTTTTCTTCA
* *
152864 TCATCT ACAT-T TCCATCA TCATCT TCATCT TCATCT TCATCT TCATCT
1 TCATCT TCATCT T-CATCT TCATCT TCATCT TCATCT TCATCT TCATCT
152912 TCA
1 TCA
152915 CCATCGTCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 1 0.03
6 37 0.95
7 1 0.03
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.45
Consensus pattern (6 bp):
TCATCT
Found at i:152892 original size:12 final size:12
Alignment explanation
Indices: 152877--152926 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
152867 TCTACATTTC
152877 CATCATCATCTT
1 CATCATCATCTT
*
152889 CATCTTCATCTT
1 CATCATCATCTT
*
152901 CATCTTCATCTT
1 CATCATCATCTT
* *
152913 CACCATCGTCTT
1 CATCATCATCTT
152925 CA
1 CA
152927 GTTCCACCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.20, C:0.36, G:0.02, T:0.42
Consensus pattern (12 bp):
CATCATCATCTT
Found at i:152924 original size:18 final size:18
Alignment explanation
Indices: 152862--152926 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
152852 TCTTTTTCTT
* *
152862 CATCATCTACAT-TTCCAT
1 CATCATCTTCATCTT-CAC
*
152880 CATCATCTTCATCTTCAT
1 CATCATCTTCATCTTCAC
*
152898 CTTCATCTTCATCTTCAC
1 CATCATCTTCATCTTCAC
*
152916 CATCGTCTTCA
1 CATCATCTTCA
152927 GTTCCACCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
18 39 0.95
19 2 0.05
ACGTcount: A:0.22, C:0.35, G:0.02, T:0.42
Consensus pattern (18 bp):
CATCATCTTCATCTTCAC
Found at i:154486 original size:20 final size:21
Alignment explanation
Indices: 154443--154500 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
154433 TGGTGGTCAC
* *
154443 TTTTGTAGTTGACACCTCTTGCA
1 TTTTGTATTTG-CATCT-TTGCA
154466 -TTTGTATTTGCATCTTTGCA
1 TTTTGTATTTGCATCTTTGCA
*
154486 TTTTGTGTTTGCATC
1 TTTTGTATTTGCATC
154501 ATATTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 5 0.16
21 17 0.55
22 9 0.29
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.52
Consensus pattern (21 bp):
TTTTGTATTTGCATCTTTGCA
Found at i:155415 original size:6 final size:6
Alignment explanation
Indices: 155404--155443 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
155394 GACATACTAG
155404 AAGAAA AAGAAA AAGAAA AAGAAA AA-AAGA AAGAAA AAGA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAA-A AAGAAA AAGA
155444 TGATTGGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 2 0.06
6 28 0.88
7 2 0.06
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:157720 original size:37 final size:37
Alignment explanation
Indices: 157655--157726 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
157645 CCCCTCAAGA
* **
157655 TCTTGAAACGAAATATGGTCTCATTCGAGAAAGTTCC
1 TCTTGAAACAAAATATCATCTCATTCGAGAAAGTTCC
*
157692 TCTTGAAACAAAATATCATCTC-TCTCGAGACAGTT
1 TCTTGAAACAAAATATCATCTCAT-TCGAGAAAGTT
157727 TTCCTTGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 1 0.03
37 29 0.97
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (37 bp):
TCTTGAAACAAAATATCATCTCATTCGAGAAAGTTCC
Found at i:158775 original size:117 final size:116
Alignment explanation
Indices: 158631--158929 Score: 287
Period size: 116 Copynumber: 2.6 Consensus size: 116
158621 GAGGATCAAT
* * * * *
158631 ATTTTAAATAAAAATTCAAAATGAGAAGAACTCATCCAAAGAGGGAGAAAAAGTTCATAATGAGA
1 ATTTTCAATAAGAATTCATAATAAGAAGAACTCATCTAAAGAGGGAGAAAAAGTTCATAATGAGA
* ** * * *
158696 AAAACTTGTTCGACCTTTTGTTCAAGTCCATCATAGAACAAGATATATCAAC
66 AAAACTTATTCGA-CTTTTGTTCAAACCCATCACAGAACAAGATAGACCAAC
* * * ** * *
158748 A-TTTCTAATAGGGAATTCATAAT-AGAAGAAATCGTCTAAATTGGGTGAAGAAGTTCATAATGA
1 ATTTTC-AATA-AGAATTCATAATAAGAAGAACTCATCTAAAGAGGGAGAAAAAGTTCATAATGA
* * * ** *
158811 GAAGAACTTATTTGATTTTTGTTCAAACCCATCACAGAAGGAGGTAGACCAAC
64 GAAAAACTTATTCGACTTTTGTTCAAACCCATCACAGAACAAGATAGACCAAC
* * * **
158864 ATTTTCAGTAAGAGTTCATAATAAAAAGAACTCATCTATGGAGGGAGAAAAAGTTCATATATGAG
1 ATTTTCAATAAGAATTCATAATAAGAAGAACTCATCTAAAGAGGGAGAAAAAGTTCATA-ATGAG
158929 A
65 A
158930 GCTTGTTTAA
Statistics
Matches: 142, Mismatches: 35, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
115 10 0.07
116 63 0.44
117 60 0.42
118 9 0.06
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (116 bp):
ATTTTCAATAAGAATTCATAATAAGAAGAACTCATCTAAAGAGGGAGAAAAAGTTCATAATGAGA
AAAACTTATTCGACTTTTGTTCAAACCCATCACAGAACAAGATAGACCAAC
Found at i:159286 original size:3 final size:3
Alignment explanation
Indices: 159278--159321 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
159268 CAAATATATG
159278 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
159322 AAATTGGAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:169243 original size:20 final size:20
Alignment explanation
Indices: 169215--169270 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 20
169205 GTATAGTAGA
*
169215 TATTCTATTAATAAAGTACAT
1 TATTTTATTAATAAAGTAC-T
**
169236 T-TTTTATTTTTAAA-TACT
1 TATTTTATTAATAAAGTACT
*
169254 TATTTTAATAATAAAGT
1 TATTTTATTAATAAAGT
169271 TTGAATATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
18 2 0.07
19 13 0.48
20 11 0.41
21 1 0.04
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (20 bp):
TATTTTATTAATAAAGTACT
Found at i:175304 original size:18 final size:18
Alignment explanation
Indices: 175281--175324 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
175271 TGACCGGTCA
175281 CGACCCGACCCGTTGACC
1 CGACCCGACCCGTTGACC
175299 CGACCCGACCCGTTGACC
1 CGACCCGACCCGTTGACC
175317 CGACCCGA
1 CGACCCGA
175325 TTGTTGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.50, G:0.23, T:0.09
Consensus pattern (18 bp):
CGACCCGACCCGTTGACC
Found at i:175389 original size:28 final size:29
Alignment explanation
Indices: 175334--175443 Score: 177
Period size: 29 Copynumber: 3.8 Consensus size: 29
175324 ATTGTTGACC
175334 GGTGCTATTCTGGTAAATAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
175363 GGTGCTATTCTGGT-AATAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
*
175391 GGTGATATTCTGGTAAATAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
* * *
175420 TGTGCTCTTCTGGTAATTAATTCG
1 GGTGCTATTCTGGTAAATAATTCG
175444 AAATGGGTGC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
28 27 0.36
29 48 0.64
ACGTcount: A:0.20, C:0.11, G:0.24, T:0.45
Consensus pattern (29 bp):
GGTGCTATTCTGGTAAATAATTCGGTTTT
Found at i:175431 original size:57 final size:58
Alignment explanation
Indices: 175334--175443 Score: 186
Period size: 57 Copynumber: 1.9 Consensus size: 58
175324 ATTGTTGACC
*
175334 GGTGCTATTCTGGTAAATAATTCGGTTTTGGTGCTATTCTGGTAA-TAATTCGGTTTT
1 GGTGATATTCTGGTAAATAATTCGGTTTTGGTGCTATTCTGGTAATTAATTCGGTTTT
* *
175391 GGTGATATTCTGGTAAATAATTCGGTTTTTGTGCTCTTCTGGTAATTAATTCG
1 GGTGATATTCTGGTAAATAATTCGGTTTTGGTGCTATTCTGGTAATTAATTCG
175444 AAATGGGTGC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 42 0.86
58 7 0.14
ACGTcount: A:0.20, C:0.11, G:0.24, T:0.45
Consensus pattern (58 bp):
GGTGATATTCTGGTAAATAATTCGGTTTTGGTGCTATTCTGGTAATTAATTCGGTTTT
Found at i:175475 original size:29 final size:29
Alignment explanation
Indices: 175421--175487 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
175411 TTCGGTTTTT
* * *
175421 GTGCTCTTCTGGTAATTAATTCGAAATGG
1 GTGCTATTTTGGTAATTAATTCGAAAAGG
* *
175450 GTGCTATTTTGGTAATTATTTTGAAAAGG
1 GTGCTATTTTGGTAATTAATTCGAAAAGG
*
175479 GTACTATTT
1 GTGCTATTT
175488 GTGTAAAATG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.43
Consensus pattern (29 bp):
GTGCTATTTTGGTAATTAATTCGAAAAGG
Found at i:182725 original size:13 final size:13
Alignment explanation
Indices: 182707--182743 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
182697 GACCGGTCAC
182707 GACCCGACCCGTT
1 GACCCGACCCGTT
*
182720 GACCCGACTCGTT
1 GACCCGACCCGTT
*
182733 AACCCGACCCG
1 GACCCGACCCG
182744 ATTAATGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.19, C:0.46, G:0.22, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:182863 original size:29 final size:29
Alignment explanation
Indices: 182754--182864 Score: 168
Period size: 29 Copynumber: 3.8 Consensus size: 29
182744 ATTAATGACC
* *
182754 GGTGCTATTCTGGTAAATAATTTGATTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
*
182783 GGTGCTATTCTGGTAAATAATTCAGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
*
182812 GGTGTTATTCTGGTAAATAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
* *
182841 GGTGCTCTTCTGGTAATTAATTCG
1 GGTGCTATTCTGGTAAATAATTCG
182865 AAATGGGTAC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.22, C:0.10, G:0.23, T:0.46
Consensus pattern (29 bp):
GGTGCTATTCTGGTAAATAATTCGGTTTT
Found at i:182884 original size:58 final size:59
Alignment explanation
Indices: 182754--182885 Score: 155
Period size: 58 Copynumber: 2.3 Consensus size: 59
182744 ATTAATGACC
* ***
182754 GGTG-CTATTCTGGTAAATAATTTGATTTTGGTGCTATTCTGGTAAATAATTCAGTTTT
1 GGTGTCTATTCTGGTAAATAATTCGATTTTGGTGCTATTCTGGTAAATAATTCAGAAAT
* * *
182812 GGTGT-TATTCTGGTAAATAATTCGGTTTTGGTGCTCTTCTGGTAATTAATTC-GAAAT
1 GGTGTCTATTCTGGTAAATAATTCGATTTTGGTGCTATTCTGGTAAATAATTCAGAAAT
*
182869 GG-GTACTATTTTGGTAA
1 GGTGT-CTATTCTGGTAA
182886 TTATTTTAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
56 2 0.03
57 4 0.06
58 57 0.90
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (59 bp):
GGTGTCTATTCTGGTAAATAATTCGATTTTGGTGCTATTCTGGTAAATAATTCAGAAAT
Done.