Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004247.1 Hibiscus syriacus cultivar Beakdansim tig00009315_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73020

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
836--874
9
4.6
9
87
6
55
58
0
0
41
0.98
1077--1747
45
14.9
45
94
2
1116
34
19
22
23
1.96
2402--2487
22
3.9
22
75
22
90
37
12
15
34
1.85
3420--3593
75
2.3
75
86
0
240
30
23
15
30
1.95
4520--4571
20
2.5
20
87
3
77
19
23
42
15
1.89
10160--10199
21
1.9
21
85
10
55
35
10
2
52
1.48
17514--17543
14
2.1
14
93
0
51
60
6
13
20
1.55
17569--17597
12
2.3
13
94
5
51
55
6
13
24
1.63
17499--17596
36
2.8
34
75
7
90
61
5
11
22
1.49
17569--17609
20
2.1
19
86
4
55
51
7
17
24
1.70
21044--21075
2
16.0
2
100
0
64
50
0
0
50
1.00
21377--21411
2
18.0
2
94
5
63
48
0
0
51
1.00
22810--22873
3
20.7
3
93
3
101
62
0
0
37
0.95
23081--23855
45
17.0
45
90
3
1156
34
18
21
24
1.96
24512--24597
22
3.9
22
75
17
88
38
12
15
33
1.85
25526--25696
76
2.3
75
82
2
207
31
23
14
30
1.94
26446--26470
12
2.1
12
100
0
50
8
16
8
68
1.38
29235--29304
21
3.2
21
73
15
61
20
22
35
21
1.96
29236--29304
23
3.1
22
75
8
68
18
23
36
21
1.95
35358--35386
12
2.3
13
94
5
51
55
6
13
24
1.63
38323--38362
11
3.3
13
80
13
50
47
0
2
50
1.14
38646--38704
2
30.5
2
75
13
52
47
1
3
47
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39348--39400
22
2.4
22
90
0
79
18
49
20
11
1.78
40089--40141
9
5.7
9
81
14
54
56
0
0
43
0.99
40094--40140
3
15.7
3
82
8
60
59
0
0
40
0.97
40094--40142
24
2.1
24
88
3
73
59
0
0
40
0.98
41825--41866
21
2.0
20
86
4
57
40
7
14
38
1.73
44252--44290
20
2.0
20
100
0
78
33
10
15
41
1.81
44292--44333
21
2.0
20
86
4
57
40
7
14
38
1.73
45116--45338
95
2.3
95
85
0
302
34
15
20
30
1.93
51485--51602
5
23.6
5
100
0
236
39
0
0
60
0.97
52119--52151
2
16.5
2
100
0
66
48
0
0
51
1.00
53393--53429
11
3.4
11
92
7
58
83
0
2
13
0.74
54279--54309
2
15.5
2
100
0
62
48
0
0
51
1.00
56778--56818
21
1.9
22
90
5
66
46
2
4
46
1.37
56850--56882
3
11.0
3
100
0
66
66
0
0
33
0.92
60264--60393
65
2.0
65
96
1
244
16
16
21
45
1.85
65367--65433
31
2.3
28
84
7
80
50
5
0
43
1.26
65447--65706
144
1.8
142
80
7
310
52
1
5
40
1.33
71436--71467
15
2.1
15
100
0
64
25
31
25
18
1.98

Tables:   1

The End!