Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004248.1 Hibiscus syriacus cultivar Beakdansim tig00009316_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135317

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9706--9761
27
2.1
27
96
0
103
28
23
7
41
1.80
25604--25652
5
10.2
5
78
14
50
20
6
0
73
1.04
25604--25643
13
2.9
13
88
7
53
20
7
0
72
1.08
25609--25643
13
2.6
14
90
4
54
22
5
0
71
1.07
25609--25663
28
2.0
27
85
3
74
23
7
0
69
1.14
53815--54001
96
1.9
96
84
2
250
33
27
16
22
1.95
56229--56345
60
2.0
59
84
5
155
30
22
5
41
1.75
57092--57130
2
19.5
2
100
0
78
48
0
0
51
1.00
68754--68801
19
2.5
19
93
0
78
33
12
4
50
1.59
69905--69948
12
3.7
12
75
0
52
25
13
11
50
1.75
69908--69953
24
1.9
24
100
0
92
26
17
10
45
1.81
71924--71981
26
2.2
27
81
12
75
37
5
5
51
1.46
71933--71982
26
2.0
26
96
4
93
34
6
8
52
1.55
72371--72397
12
2.2
12
100
0
54
22
18
0
59
1.38
74989--75094
43
2.5
43
93
0
176
34
16
17
31
1.92
77236--77293
29
2.0
29
96
0
107
15
13
22
48
1.80
77859--77898
21
1.9
21
94
0
71
45
5
10
40
1.60
77919--77978
25
2.4
25
86
8
77
25
20
8
46
1.78
77945--78012
16
4.2
16
92
0
109
27
17
5
48
1.70
77936--78009
9
8.9
9
70
16
61
25
18
6
48
1.73
79511--79550
20
2.0
20
85
9
55
50
0
5
45
1.23
79850--79885
18
2.1
18
94
5
65
41
0
2
55
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81380--81428
23
2.1
23
88
0
71
30
16
16
36
1.91
106759--106823
4
16.2
4
100
0
130
50
24
0
24
1.49
112694--112801
37
2.9
37
82
5
128
35
15
22
26
1.94
114862--114895
17
2.0
17
100
0
68
41
11
11
35
1.78
115784--115821
2
19.0
2
100
0
76
50
0
50
0
1.00
121757--121797
2
20.5
2
100
0
82
51
0
0
48
1.00
129697--129742
22
2.0
23
87
4
67
60
13
8
17
1.56
129697--129749
10
5.1
10
76
17
54
60
15
9
15
1.58

Tables:   1

The End!