Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004249.1 Hibiscus syriacus cultivar Beakdansim tig00009317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87826

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6602--6632
2
15.5
2
100
0
62
48
0
0
51
1.00
11692--11773
40
2.1
40
84
4
105
26
14
7
51
1.69
25499--25534
15
2.2
16
90
9
56
52
0
0
47
1.00
27894--27932
17
2.3
17
95
0
69
33
10
25
30
1.89
29304--29369
31
2.1
31
88
0
96
30
12
7
50
1.67
29546--29639
25
3.7
26
77
13
88
53
0
5
41
1.24
31919--31974
21
2.8
20
83
5
69
32
5
17
44
1.72
43094--43126
14
2.4
14
94
0
57
30
30
6
33
1.82
62848--62972
5
25.0
5
100
0
250
40
0
0
60
0.97
63420--63465
3
15.7
3
95
4
85
34
0
0
65
0.93
63512--63547
14
2.6
14
95
0
63
22
33
19
25
1.97
64955--64983
12
2.3
13
94
5
51
31
0
0
68
0.89
71794--71965
73
2.4
70
74
13
175
32
19
10
37
1.86
72466--72738
122
2.2
123
79
3
320
34
22
14
28
1.93
72466--72774
122
2.5
123
76
4
313
33
23
14
28
1.94
73665--73706
16
2.6
16
92
0
66
57
16
2
23
1.51
74253--74295
4
10.8
4
94
0
77
25
0
2
72
0.97
74382--74445
33
2.0
32
90
9
103
25
12
3
59
1.48
74386--74456
33
2.2
33
82
5
81
30
16
2
49
1.61
74624--74658
15
2.2
16
90
5
54
22
14
5
57
1.59
75792--75935
72
2.0
72
97
0
270
35
15
12
36
1.86
80946--81053
37
2.9
37
75
2
110
40
11
13
34
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81411--81508
18
5.6
17
71
25
64
30
3
1
65
1.15
81473--81539
22
3.1
21
72
18
57
29
4
0
65
1.12
83869--84012
56
2.6
56
86
0
189
41
11
15
31
1.83
84132--84182
23
2.2
23
85
0
66
33
11
13
41
1.81
84142--84187
23
2.0
23
95
0
83
30
10
15
43
1.81

Tables:   1

The End!