Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000425.1 Hibiscus syriacus cultivar Beakdansim tig00000776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85765

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1310--1367
29
2.0
29
100
0
116
44
17
17
20
1.86
3681--3968
143
2.0
145
93
4
494
32
16
9
42
1.80
5921--5965
16
2.8
16
87
12
65
51
0
0
48
1.00
13336--13364
2
14.5
2
100
0
58
51
0
0
48
1.00
18246--18287
17
2.4
18
84
8
59
71
2
7
19
1.20
21024--21074
20
2.6
19
78
9
57
29
11
33
25
1.91
21424--21452
15
1.9
15
100
0
58
27
6
24
41
1.80
21508--21784
54
5.1
54
87
2
351
33
15
19
31
1.93
22571--22609
20
1.9
21
89
5
62
28
15
20
35
1.93
22572--22668
50
2.0
49
85
6
133
30
15
20
32
1.94
30045--30090
16
3.0
16
81
6
51
69
0
2
28
1.00
33222--33298
41
1.9
40
87
10
113
31
14
19
35
1.92
35426--35454
14
2.1
14
100
0
58
51
0
0
48
1.00
35917--35963
15
3.1
15
87
0
58
48
2
6
42
1.40
35941--36001
25
2.5
25
82
10
74
47
6
1
44
1.39
37542--37623
27
3.1
27
85
5
105
52
2
1
43
1.22
38147--38197
10
5.1
10
95
0
93
31
27
9
31
1.89
40628--40920
5
58.8
5
99
0
579
60
19
0
20
1.36
42737--42856
11
10.5
11
78
8
123
25
21
25
26
2.00
42737--42856
24
5.2
22
87
4
123
25
21
25
26
2.00
42769--42856
24
3.8
24
92
3
126
22
23
26
27
2.00
48582--48661
40
2.0
39
83
7
99
55
20
21
3
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53348--53535
32
5.9
33
77
6
149
28
18
20
32
1.96
70865--70922
20
2.8
20
82
15
64
46
0
1
51
1.11
70870--70922
22
2.5
23
77
22
62
47
0
1
50
1.12

Tables:   1

The End!