genome.fa.s4251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004251.1 Hibiscus syriacus cultivar Beakdansim tig00009319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67381

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322--1387	33	2.1	31	86	8	89	36	24	15	24	1.93
10944--10977	18	1.9	18	94	5	61	76	5	5	11	1.14
11178--11219	3	14.0	3	94	0	75	35	30	0	33	1.58
18046--18307	41	6.3	41	81	4	276	28	22	17	31	1.96
18051--18307	124	2.1	124	88	0	379	28	22	17	31	1.97
18077--18286	83	2.5	82	91	4	350	26	22	18	32	1.97
21717--21954	43	5.6	42	82	5	282	21	21	23	32	1.98
21717--21982	85	3.1	85	82	5	329	21	21	23	33	1.97
21717--21982	43	6.2	42	81	8	225	21	21	23	33	1.97
21717--21982	128	2.1	129	82	6	317	21	21	23	33	1.97
22202--22242	2	20.5	2	100	0	82	48	0	0	51	1.00
23113--23147	16	2.2	16	89	0	52	80	0	11	8	0.92
26699--26798	24	4.2	24	71	5	85	47	16	13	24	1.81
26692--26800	48	2.3	48	75	0	110	48	15	12	22	1.79
29284--29314	7	4.3	7	92	8	53	25	29	32	12	1.93
29285--29339	8	7.5	8	75	17	57	21	25	34	18	1.96
29285--29314	15	2.0	15	100	0	60	26	26	33	13	1.93
29317--29344	13	2.2	13	100	0	56	14	25	42	17	1.87
29321--29397	18	4.6	18	79	15	92	14	19	49	16	1.80
29317--29393	31	2.5	31	89	0	127	16	20	45	16	1.85
29339--29374	13	2.8	13	86	0	54	16	19	47	16	1.83
31728--31764	6	6.2	6	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33905--33950	20	2.4	20	79	17	53	32	19	21	26	1.97
34344--34408	22	3.0	21	77	4	58	24	16	23	35	1.95
35593--35645	21	2.5	21	87	0	70	24	20	24	30	1.99
36374--36451	31	2.5	31	91	0	120	41	21	19	17	1.91
39732--40242	54	9.4	54	89	3	749	30	15	18	35	1.92
46330--46382	20	2.7	20	96	0	97	39	16	26	16	1.91
46810--47309	54	9.3	54	85	1	608	32	15	17	35	1.91
55880--55965	45	1.9	45	90	0	136	34	13	20	30	1.92
59775--59819	24	2.0	23	86	8	65	28	0	2	68	1.01
59947--59990	23	1.9	23	95	0	79	27	22	11	38	1.88
61222--61349	65	2.0	65	82	11	156	32	25	21	20	1.97
61887--61938	21	2.4	22	90	3	79	25	26	23	25	2.00
61891--61946	22	2.6	21	88	2	76	23	25	26	25	2.00
64291--64344	24	2.2	24	86	0	72	27	11	20	40	1.86

Tables:   1

The End!