Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004252.1 Hibiscus syriacus cultivar Beakdansim tig00009323_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65802

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4165--4204
21
1.9
21
94
0
71
30
15
7
47
1.72
4199--4297
33
3.0
32
91
4
153
33
7
14
45
1.71
4283--4337
13
4.2
13
75
13
58
34
3
12
49
1.59
4528--4567
21
1.9
21
89
0
62
20
27
25
27
1.99
4707--4755
17
2.9
17
93
0
80
38
14
10
36
1.80
4934--4990
21
2.7
21
88
0
87
29
24
26
19
1.98
5221--5319
33
3.0
33
94
1
164
45
15
7
32
1.73
7611--7656
12
3.6
12
81
16
56
17
19
17
45
1.85
7610--7649
15
2.9
14
85
14
57
20
17
15
47
1.83
7739--7796
28
2.1
28
84
9
75
25
17
10
46
1.79
8614--8660
13
3.5
13
76
18
51
51
10
0
38
1.37
20808--20879
35
2.1
35
100
0
144
29
20
25
25
1.99
21557--21590
6
5.5
6
86
6
50
79
0
0
20
0.73
21556--21599
15
3.0
14
83
9
52
77
0
0
22
0.77
21560--21607
18
2.7
18
81
12
55
72
0
0
27
0.84
21864--22236
84
4.4
84
83
1
379
25
18
23
32
1.97
22287--22885
124
4.8
123
77
11
521
26
18
24
31
1.97
22539--23126
240
2.4
242
87
2
838
26
18
22
31
1.97
24266--24465
95
2.1
95
91
0
319
33
17
14
36
1.89
28166--28203
3
13.3
3
89
10
62
68
0
0
31
0.90
29273--29332
27
2.3
26
91
2
93
50
11
3
35
1.56
38923--38978
18
3.1
18
97
0
103
28
35
8
26
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41121--41680
284
2.0
284
98
0
1093
36
15
15
32
1.89
45067--45105
19
2.0
19
90
5
60
41
0
0
58
0.98
47699--47728
15
2.0
15
100
0
60
46
0
0
53
1.00
47699--47938
32
7.5
33
68
25
117
35
0
11
52
1.41
47676--47834
32
5.3
31
72
23
126
38
0
8
52
1.37
47763--47872
21
4.5
22
71
25
71
34
0
11
52
1.44
47714--48006
54
5.5
54
84
8
413
34
0
12
52
1.42
47892--47989
32
3.4
32
71
26
117
36
0
10
53
1.35
47906--47984
22
4.4
18
68
23
58
34
0
12
53
1.39
47727--48006
155
1.8
156
95
0
508
34
0
12
52
1.43
47937--48086
80
1.9
80
97
0
282
33
0
14
52
1.41
47836--48106
134
2.0
134
94
1
481
33
0
13
52
1.41
48822--48903
30
2.6
31
82
5
112
52
8
10
28
1.66
57458--57503
20
2.3
20
82
17
60
30
26
8
34
1.86
58629--58677
19
2.7
17
84
9
53
26
20
28
24
1.99
58646--58736
47
1.9
48
86
6
132
34
16
20
28
1.95
58648--58771
47
2.7
47
80
9
130
29
18
23
29
1.98
59880--59908
3
9.7
3
100
0
58
34
0
65
0
0.93

Tables:   1

The End!