genome.fa.s4254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004254.1 Hibiscus syriacus cultivar Beakdansim tig00009325_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146320

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2340--2430	30	3.0	31	85	9	125	27	24	19	28	1.99
4278--4331	23	2.3	24	90	3	83	9	42	27	20	1.82
4370--4430	24	2.5	24	77	15	63	21	27	21	29	1.98
13380--13407	2	14.0	2	100	0	56	50	0	0	50	1.00
22765--22797	2	16.5	2	100	0	66	48	0	0	51	1.00
28428--28469	17	2.3	19	80	12	52	16	0	19	64	1.30
36565--36594	12	2.5	12	94	0	51	70	0	0	30	0.88
43184--43265	40	2.0	41	86	9	114	21	34	9	34	1.87
46841--47115	138	2.0	139	92	3	457	26	22	16	34	1.95
57156--57189	9	3.7	9	96	4	59	50	17	8	23	1.74
57195--57581	183	2.1	183	92	1	643	45	8	3	42	1.50
70233--70276	21	2.2	20	83	4	52	50	0	0	50	1.00
70857--70903	2	23.5	2	100	0	94	48	0	0	51	1.00
71679--71806	64	2.0	64	95	0	229	33	10	26	29	1.89
74229--74272	19	2.3	19	100	0	88	15	29	15	38	1.89
76193--76230	18	2.2	17	90	4	58	21	26	0	52	1.47
76545--76669	31	4.0	31	90	0	178	37	23	17	21	1.94
83048--83101	21	2.6	21	93	0	90	29	25	22	22	1.99
83064--83247	92	2.0	92	86	6	257	28	22	19	29	1.98
83200--83332	21	6.3	21	74	13	121	25	21	21	32	1.98
83205--83318	42	2.7	42	94	0	192	23	20	21	34	1.97
83415--83446	6	5.5	6	92	7	57	31	53	15	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83415--83449	11	3.1	11	95	4	61	31	51	17	0	1.45
83961--84003	5	8.0	5	97	2	59	0	18	55	25	1.42
83960--84007	6	8.7	6	95	4	68	0	16	54	29	1.43
83960--84007	10	4.4	11	92	7	64	0	16	54	29	1.43
84104--84212	33	3.0	33	76	21	128	38	20	20	21	1.94
84136--84206	21	3.4	21	74	14	83	39	21	18	21	1.93
84137--84278	42	3.2	42	81	14	185	35	21	19	23	1.96
84158--84232	21	3.6	21	75	20	75	33	24	20	22	1.97
84144--84327	93	2.0	89	87	7	262	32	21	21	25	1.98
84186--84283	51	1.9	51	95	0	178	33	20	21	24	1.97
84251--84305	21	2.6	21	91	0	83	30	27	20	21	1.98
84312--84385	21	3.5	21	90	0	112	22	21	27	28	1.99
87683--87713	16	2.0	16	93	6	55	51	0	0	48	1.00
95033--95068	14	2.3	17	86	13	51	41	2	2	52	1.30
96369--96407	20	1.9	21	89	5	62	20	20	23	35	1.96
99507--99534	2	14.0	2	100	0	56	50	0	0	50	1.00
99601--99626	3	8.7	3	100	0	52	34	30	0	34	1.58
108581--108646	29	2.2	29	79	10	71	50	10	6	33	1.62
111979--112051	18	3.9	18	78	7	83	23	19	28	28	1.98
112316--112361	4	11.8	4	88	11	69	28	0	0	71	0.86
112301--112359	26	2.3	26	90	0	91	32	0	0	67	0.91
112301--112358	22	2.6	22	86	0	80	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113393--113452	23	2.6	23	91	0	93	20	26	26	26	1.99
115666--115710	21	2.1	21	83	0	54	40	8	2	48	1.47
117619--117661	15	2.9	15	89	0	68	27	23	23	25	2.00
119014--119120	38	2.8	38	86	0	142	48	14	11	26	1.76
119323--119410	28	3.1	28	100	0	176	32	19	23	23	1.97
124485--124513	15	1.9	15	100	0	58	48	27	6	17	1.72
124639--125009	180	2.1	180	90	5	592	43	3	8	45	1.51
128034--128092	29	2.0	29	96	0	109	47	10	18	23	1.79
139942--139971	6	4.8	6	95	4	51	36	0	0	63	0.95
145703--145747	13	3.5	13	84	3	56	44	0	2	53	1.13
145703--145737	15	2.3	15	90	0	52	45	0	2	51	1.16
145695--145901	109	1.9	108	80	13	237	28	5	3	62	1.33
145895--145919	2	12.5	2	100	0	50	48	0	0	52	1.00
145984--146070	17	5.1	17	72	20	65	26	2	2	68	1.13
146026--146085	9	7.1	9	83	11	56	26	1	0	71	0.95
146038--146137	24	4.4	21	71	21	53	21	3	3	73	1.11
146046--146087	13	3.2	14	87	12	63	26	0	0	73	0.83
145983--146085	17	5.9	17	66	28	56	26	1	1	69	1.09
146017--146103	17	5.6	16	74	18	69	25	2	1	71	1.05
146034--146087	13	4.4	13	78	19	62	25	0	0	74	0.83
146032--146085	26	2.2	26	86	6	76	25	0	0	74	0.83
146151--146247	21	4.4	22	71	13	67	16	6	3	74	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146151--146218	23	3.0	22	81	14	61	14	4	1	79	0.96
146184--146209	13	2.0	13	100	0	52	15	0	0	84	0.62
146184--146218	5	7.4	5	87	12	56	17	0	0	82	0.66
146198--146258	33	1.9	31	90	6	95	19	6	6	67	1.36

Tables:   1

The End!