Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01004255.1 Hibiscus syriacus cultivar Beakdansim tig00009326_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 170008
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


File 2 of 2

Found at i:166597 original size:28 final size:28

Alignment explanation


    Indices: 166538--166599  Score: 97
    Period size: 28  Copynumber: 2.2  Consensus size: 28

     166528 AAAACATCGA

                                      **
     166538 ATGCATTTGATGCATCGATGCACAAGTT
          1 ATGCATTTGATGCATCGATGCACAAGCC

                                   *    
     166566 ATGCATTTGATGCATCGATGCACCAGCC
          1 ATGCATTTGATGCATCGATGCACAAGCC

                  
     166594 ATGCAT
          1 ATGCAT

     166600 CGATGCACTC


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  28   31  1.00

ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29


Consensus pattern (28 bp):   
ATGCATTTGATGCATCGATGCACAAGCC

Done.