Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004257.1 Hibiscus syriacus cultivar Beakdansim tig00009328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100695

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11481--11520
20
2.0
20
85
4
55
35
17
5
42
1.71
11480--11533
21
2.7
20
82
2
72
35
18
9
37
1.83
11544--11631
45
1.9
46
90
4
142
42
7
14
35
1.75
14968--14999
2
16.0
2
100
0
64
50
0
0
50
1.00
16209--16252
23
1.9
23
100
0
88
50
40
4
4
1.43
20363--20397
14
2.4
15
95
4
63
37
22
17
22
1.94
24372--24409
2
19.0
2
100
0
76
50
0
0
50
1.00
28334--28377
2
22.0
2
100
0
88
50
0
0
50
1.00
34749--34812
32
2.0
32
100
0
128
18
6
25
50
1.70
40885--40914
2
15.0
2
100
0
60
50
0
0
50
1.00
45531--45879
174
2.0
175
89
2
533
45
19
15
20
1.85
50474--50530
27
2.1
27
87
6
80
49
0
3
47
1.18
51646--51670
2
12.5
2
100
0
50
0
48
0
52
1.00
51670--51706
2
18.5
2
100
0
74
48
0
0
51
1.00
56375--56418
23
1.9
23
95
0
79
15
29
27
27
1.96
56699--56984
6
48.2
6
91
5
458
18
0
31
49
1.53
60120--60168
6
8.2
6
95
0
89
32
48
16
2
1.57
60166--60229
5
12.8
5
94
0
92
17
37
40
4
1.70
65842--65898
27
2.1
27
100
0
114
28
26
15
29
1.96
71510--71843
165
2.0
166
97
2
634
31
17
6
44
1.74
73508--73568
2
30.5
2
100
0
122
49
0
0
50
1.00
74719--74764
22
2.1
22
91
0
74
21
8
13
56
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79170--79196
3
9.0
3
100
0
54
33
0
0
66
0.92
82424--82465
23
2.0
22
86
13
61
61
0
0
38
0.96
83236--83263
2
14.0
2
100
0
56
50
0
0
50
1.00
90711--90759
21
2.3
21
96
0
89
26
18
12
42
1.85
90994--91050
26
2.2
26
96
0
105
24
26
14
35
1.93
96659--96739
34
2.4
34
75
4
83
14
14
22
48
1.81
96682--96743
24
2.6
24
92
0
97
12
12
22
51
1.74
100553--100596
16
2.9
15
86
6
63
9
13
22
54
1.67

Tables:   1

The End!