genome.fa.s4258.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004258.1 Hibiscus syriacus cultivar Beakdansim tig00009329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94066

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9900--10264	91	4.0	91	85	2	475	24	20	16	38	1.93
10658--10841	75	2.5	75	83	4	221	38	10	19	31	1.86
10861--11119	36	7.4	36	77	10	234	38	13	22	25	1.91
10830--11046	101	2.1	102	84	6	289	38	13	22	25	1.90
10959--11119	37	4.4	37	86	1	200	38	14	21	25	1.91
10960--11119	73	2.2	73	84	2	205	38	14	21	25	1.91
10861--11184	175	1.9	173	86	3	463	38	13	20	27	1.90
11071--11194	65	1.9	65	85	3	169	38	12	16	31	1.87
11080--11207	65	2.0	65	81	3	150	40	14	15	29	1.86
11034--11336	152	2.0	153	86	5	427	38	13	19	28	1.89
11187--11424	36	7.0	36	68	16	139	39	12	21	27	1.89
11136--11234	50	2.0	51	83	2	128	42	14	16	27	1.86
11220--11392	66	2.6	66	89	0	265	36	12	23	27	1.90
11363--11707	74	4.6	73	80	9	329	40	14	17	28	1.88
11593--11709	36	3.2	36	72	11	101	42	15	16	25	1.87
11754--11948	36	5.3	36	76	8	160	38	10	17	33	1.84
14417--14453	13	2.6	15	79	16	51	48	8	24	18	1.75
14606--14898	149	2.0	149	84	1	390	18	26	19	35	1.95
15882--15924	18	2.4	18	80	7	52	44	0	6	48	1.29
16944--16975	15	2.0	17	88	11	50	59	12	6	21	1.55
18073--18103	13	2.4	13	100	0	62	6	6	0	87	0.68
18061--18109	19	2.6	18	83	9	53	6	10	2	81	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21743--21803	21	3.2	21	65	29	64	31	4	21	42	1.74
21737--21842	35	3.0	35	94	4	178	29	5	18	46	1.72
30865--30890	10	2.6	10	100	0	52	11	50	0	38	1.39
32823--32851	15	1.9	15	100	0	58	62	17	0	20	1.33
33718--33759	13	3.2	13	80	12	50	69	0	4	26	1.08
33875--33930	12	4.8	12	76	10	62	71	1	0	26	0.96
33842--33903	28	2.1	30	88	5	92	66	4	3	25	1.27
33876--33932	22	2.7	22	81	5	73	70	1	0	28	0.98
33875--33949	34	2.2	35	83	11	93	68	1	2	28	1.12
35288--35424	36	3.8	36	79	12	149	31	10	16	41	1.82
35319--35427	34	3.2	33	79	18	125	29	9	17	44	1.80
35452--35536	30	2.9	29	84	6	109	35	9	17	37	1.82
35519--35706	36	5.4	36	69	14	142	40	12	18	28	1.87
35425--35795	102	3.7	102	87	5	499	37	12	19	30	1.89
35739--35866	39	3.2	38	72	14	123	35	14	20	28	1.92
35716--35884	82	2.1	82	90	2	268	34	12	19	33	1.89
35874--35988	36	3.2	36	70	14	119	42	11	14	31	1.81
35860--36164	72	4.2	72	90	0	403	41	13	16	28	1.86
35890--36003	36	3.2	35	74	9	122	43	13	14	28	1.83
35902--36155	36	7.1	35	65	18	119	41	13	16	27	1.87
40833--41059	18	12.1	17	65	23	59	66	3	4	24	1.27
40994--41049	12	4.8	11	75	16	51	69	3	0	26	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40964--41045	28	2.9	27	79	17	76	65	4	1	28	1.20
42434--42575	36	3.8	36	75	21	134	33	9	18	39	1.82
42437--42587	75	2.0	78	84	10	204	35	9	17	37	1.82
42603--42684	29	2.8	28	78	8	92	36	9	17	36	1.82
42670--42852	36	5.2	36	71	12	157	38	13	19	28	1.89
42771--42856	37	2.4	36	88	2	118	39	13	20	25	1.90
42576--42947	102	3.7	102	89	5	510	36	11	19	31	1.88
42867--43028	82	2.0	82	93	0	279	36	9	19	34	1.85
42867--42992	43	3.0	43	75	8	152	35	8	19	35	1.83
42898--43028	39	3.3	39	76	8	136	38	10	18	32	1.85
43025--43139	36	3.2	36	71	4	106	41	10	14	33	1.80
43033--43315	72	3.9	72	90	0	377	40	12	17	29	1.87
43074--43317	36	6.8	36	66	12	135	40	13	17	28	1.88
44568--44750	95	1.9	95	89	0	285	31	16	18	32	1.94
48722--48775	13	4.4	13	76	19	53	70	0	3	25	1.04
48844--48928	28	2.9	30	81	12	86	67	3	1	28	1.15
48878--48928	22	2.4	22	83	3	68	70	1	0	27	0.98
48877--48927	12	4.4	12	75	9	61	70	1	0	27	0.98
50328--50463	36	3.8	36	83	11	165	30	11	16	41	1.84
50560--50643	35	2.4	35	83	2	105	41	11	20	26	1.86
50530--50831	102	3.0	101	89	2	444	36	11	19	31	1.88
50754--50916	82	2.0	82	89	2	249	34	12	18	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50790--50901	43	2.7	41	72	11	122	34	14	17	33	1.90
50790--50913	39	3.1	38	68	17	106	37	13	16	32	1.88
50910--51202	36	8.1	36	69	7	173	41	13	15	29	1.86
50918--51196	72	3.9	72	92	0	423	41	13	16	28	1.86
52453--52634	95	1.9	95	87	2	267	31	18	18	31	1.95
56189--56242	13	4.4	13	76	19	53	70	0	3	25	1.04
56344--56394	12	4.4	12	75	9	61	70	1	0	27	0.98
56345--56395	22	2.4	22	83	3	68	70	1	0	27	0.98
57812--57952	36	4.0	35	83	9	171	30	9	17	42	1.81
57976--58058	30	2.8	29	82	7	96	34	10	15	38	1.83
57986--58060	30	2.5	30	85	6	100	34	10	18	36	1.86
58043--58230	36	5.4	36	71	14	160	39	13	19	27	1.89
58144--58230	37	2.4	36	88	1	120	40	13	20	25	1.89
58015--58319	102	3.0	102	93	1	504	37	12	19	30	1.89
58242--58406	84	2.0	84	84	2	217	39	10	17	32	1.85
58276--58401	43	3.0	42	71	9	121	42	11	17	29	1.84
58397--58529	36	3.7	36	73	7	126	42	10	15	31	1.80
58406--58689	72	3.9	72	89	0	408	41	12	17	28	1.86
58434--58692	36	7.2	35	66	11	148	41	13	16	28	1.86
59886--60111	94	2.6	86	76	14	210	31	19	19	29	1.96
59944--60124	95	1.9	94	88	1	272	30	18	18	32	1.95
64123--64164	13	3.2	13	80	12	50	69	0	4	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64246--64325	3	26.7	3	70	22	53	66	5	1	27	1.20
64247--64307	12	4.5	13	78	13	61	65	4	1	27	1.22
64261--64324	19	3.5	19	75	12	62	65	6	0	28	1.16
64279--64329	12	4.4	12	75	9	61	70	3	0	25	1.04
64280--64330	22	2.4	22	83	3	68	70	3	0	25	1.04
65962--66014	9	5.6	10	75	16	51	43	1	1	52	1.23
67868--67921	2	27.5	2	96	3	101	51	0	0	48	1.00
68204--68257	27	2.0	27	92	0	90	37	25	9	27	1.87
68506--68551	19	2.4	19	96	0	83	13	30	19	36	1.90
69261--69302	21	2.0	21	85	0	57	40	2	4	52	1.35
71078--71134	21	2.7	21	77	0	60	29	31	17	21	1.96
71120--71162	21	2.0	21	86	0	59	16	34	34	13	1.88
73035--73407	189	2.0	187	97	2	712	29	21	17	32	1.96
75570--75626	24	2.4	24	96	0	105	33	22	21	22	1.97
77183--77215	15	2.2	15	100	0	66	15	15	36	33	1.88
77239--77301	24	2.7	24	87	2	92	26	23	26	22	2.00

Tables:   1

The End!