genome.fa.s4259.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004259.1 Hibiscus syriacus cultivar Beakdansim tig00009330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191420

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6372--6533	65	2.5	63	82	5	182	32	24	16	27	1.96
12265--12344	23	3.6	23	76	8	94	26	26	22	25	2.00
12264--12366	44	2.4	42	81	9	127	28	26	22	23	1.99
14962--14999	20	1.9	20	94	0	67	31	34	15	18	1.92
14962--15127	65	2.6	64	78	11	169	31	25	17	25	1.97
15010--15171	65	2.5	64	83	6	193	29	24	16	29	1.96
17387--17419	10	3.5	10	92	8	52	21	0	0	78	0.75
25749--25787	18	2.2	17	90	4	60	58	0	10	30	1.31
31423--31505	42	2.0	43	81	11	100	59	1	3	36	1.23
32788--32847	25	2.4	26	77	8	70	61	0	1	36	1.06
32814--32875	22	2.9	22	79	11	58	62	1	0	35	1.05
32752--32873	55	2.2	53	77	20	135	61	1	0	36	1.12
33266--33319	19	2.8	19	84	13	67	33	1	0	64	1.04
33696--33734	20	1.9	20	84	5	51	41	5	5	48	1.47
33895--33943	14	3.5	14	100	0	98	34	0	0	65	0.93
34027--34106	19	4.3	19	72	20	62	48	1	1	48	1.17
34188--34255	22	3.0	22	81	14	68	48	1	1	48	1.19
34220--34288	22	3.3	21	74	11	61	49	0	1	49	1.09
34262--34288	9	3.0	9	100	0	54	44	0	0	55	0.99
34290--34341	24	2.2	24	79	3	61	46	0	3	50	1.20
34775--34805	15	2.1	15	93	0	53	54	0	0	45	0.99
49110--49166	25	2.2	26	93	6	98	28	17	12	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49117--49168	25	2.1	25	100	0	104	28	15	11	44	1.81
54817--54853	18	2.0	20	89	10	60	35	5	2	56	1.36
67500--67540	19	2.1	20	86	13	59	56	12	0	31	1.36
74152--74221	22	3.3	21	72	16	63	44	2	2	50	1.31
74186--74359	89	2.0	88	93	2	294	45	6	10	37	1.64
77714--77766	3	17.3	3	84	11	72	33	1	0	64	1.05
77703--77766	22	3.0	21	86	11	85	32	3	0	64	1.10
77719--77766	25	1.9	25	91	8	80	33	0	0	66	0.92
90762--90808	14	3.3	14	85	11	60	76	0	14	8	1.01
90760--90801	7	5.9	7	78	15	50	73	0	16	9	1.08
90760--90811	22	2.3	22	83	12	61	76	0	15	7	0.99
92215--92267	3	17.3	3	84	11	72	33	1	0	64	1.05
92204--92267	19	3.1	20	84	15	78	32	3	0	64	1.10
96856--96924	35	2.0	35	94	0	120	44	27	0	27	1.54
98915--99018	31	3.4	30	78	13	115	63	25	9	0	1.31
98915--99018	30	3.4	31	80	9	124	63	25	9	0	1.31
101318--101377	3	20.7	3	77	13	63	38	0	0	61	0.96
102835--102876	20	2.2	19	86	4	57	33	0	2	64	1.07
102923--102971	23	2.0	25	84	7	66	44	2	0	53	1.12
103458--103515	24	2.4	24	77	11	57	31	5	1	62	1.27
106804--106835	15	2.1	15	94	0	55	25	18	9	46	1.79
114173--114216	20	2.2	20	84	8	54	72	0	22	4	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114149--114212	26	2.4	26	92	5	101	73	0	21	4	1.01
114571--114619	19	2.8	17	81	9	55	36	10	6	46	1.63
115757--116416	113	5.8	113	93	0	1061	37	13	19	29	1.91
118228--118269	20	2.2	19	86	4	57	33	0	2	64	1.07
118316--118364	23	2.0	25	84	7	66	44	4	0	51	1.20
127998--128058	31	2.0	31	100	0	122	39	14	13	32	1.85
130745--130915	54	3.2	54	88	0	243	10	22	23	43	1.84
131664--131733	29	2.4	29	90	4	97	30	14	11	44	1.80
131677--131735	29	2.0	29	100	0	118	23	13	13	49	1.78
134378--134432	2	27.5	2	100	0	110	49	0	0	50	1.00
135321--135361	20	2.1	19	86	9	55	48	9	0	41	1.36
142062--142106	19	2.3	20	81	14	58	20	0	0	80	0.72
142042--142107	30	2.2	30	84	7	82	19	3	1	75	1.01
142056--142114	29	2.0	29	83	9	75	18	3	0	77	0.90
142071--142114	19	2.4	19	88	3	63	15	2	0	81	0.78
142165--142219	20	2.9	19	75	19	62	12	9	1	76	1.10
142299--142341	7	6.4	7	97	2	72	13	0	9	76	1.01
142299--142356	7	9.3	6	87	9	57	13	1	6	77	1.05
143593--143630	19	2.1	18	90	5	58	47	0	2	50	1.15
143619--143689	28	2.7	27	85	12	94	49	0	7	43	1.29
143627--143689	28	2.3	28	89	10	96	47	0	7	44	1.32
143799--143836	20	1.9	20	94	0	67	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146188--146239	20	2.6	20	87	0	77	50	17	13	19	1.78
146214--146506	112	2.6	112	90	1	480	44	14	15	25	1.84
146454--146791	162	2.1	162	89	1	516	42	11	15	30	1.83
148411--148658	132	1.9	132	95	0	451	34	8	11	45	1.71
149149--149197	27	2.0	26	84	15	68	59	0	4	36	1.17
151847--151916	35	2.0	35	100	0	140	34	28	5	31	1.81
159359--159463	22	4.8	21	80	10	95	27	29	20	22	1.98
159366--159421	22	2.5	22	97	0	103	28	35	16	19	1.93
161336--161368	11	2.8	12	90	4	50	42	15	3	39	1.62
163980--164039	31	1.9	31	89	0	93	30	6	5	58	1.45
164156--164216	30	2.1	29	81	6	70	52	1	4	40	1.33
164283--164374	28	3.2	28	66	11	78	40	4	7	47	1.52
164254--164374	58	2.1	58	98	1	235	38	4	6	49	1.51
164871--164927	26	2.1	27	93	3	98	38	8	3	49	1.51
168180--168259	3	28.0	3	85	7	87	62	1	1	35	1.11
168235--168263	15	1.9	15	100	0	58	75	0	0	24	0.80
168210--168266	18	3.1	19	82	5	64	70	1	1	26	1.07
168608--169101	123	4.2	117	84	8	525	29	19	13	38	1.90
168707--169046	123	2.8	123	92	0	558	28	19	12	38	1.89
169010--169176	73	2.3	71	83	6	219	31	18	17	31	1.95
169330--169809	113	4.2	113	96	0	861	29	17	15	38	1.90
170378--170479	50	2.0	50	87	7	145	24	21	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174964--174989	11	2.4	11	100	0	52	0	15	0	84	0.62
174957--175017	17	3.5	17	76	13	61	0	21	0	78	0.75
174957--174990	6	5.8	6	89	6	52	0	17	0	82	0.67
174997--175050	26	2.0	27	96	3	101	3	16	11	68	1.33
178287--178325	20	2.0	20	89	0	60	66	12	7	12	1.43
178487--178538	28	1.9	26	88	7	77	59	9	9	21	1.57
182123--182208	3	30.0	3	83	6	99	62	1	2	33	1.15
182184--182212	15	1.9	15	100	0	58	75	0	0	24	0.80
183282--183382	36	2.8	36	93	0	166	20	12	18	47	1.82
183276--183382	12	8.9	12	82	0	133	20	14	19	45	1.84
184008--184052	17	2.6	17	100	0	90	55	0	8	35	1.31
187859--187892	14	2.4	14	90	5	50	8	32	32	26	1.87

Tables:   1

The End!