Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000426.1 Hibiscus syriacus cultivar Beakdansim tig00000778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3165331
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 15 of 15
Found at i:3107673 original size:35 final size:36
Alignment explanation
Indices: 3107603--3107676 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 36
3107593 ACAATAGTTA
* *
3107603 ATATATGTAACCTATAGTATATGTATACATGTAAACT
1 ATATATGTAACCTATAGTACATGTATA-ATATAAACT
* *
3107640 ATATATGTAACTTATAGTACATGTAT-GTATAAACT
1 ATATATGTAACCTATAGTACATGTATAATATAAACT
3107675 AT
1 AT
3107677 GTATAGTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 9 0.27
37 24 0.73
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (36 bp):
ATATATGTAACCTATAGTACATGTATAATATAAACT
Found at i:3107685 original size:20 final size:20
Alignment explanation
Indices: 3107662--3107711 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
3107652 TATAGTACAT
* *
3107662 GTATGTATAAACTATGTATA
1 GTATATATAAACTATATATA
3107682 GTATATATAAACTATATATA
1 GTATATATAAACTATATATA
3107702 -TATATATAAA
1 GTATATATAAA
3107712 AACCATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (20 bp):
GTATATATAAACTATATATA
Found at i:3107859 original size:14 final size:13
Alignment explanation
Indices: 3107795--3107859 Score: 51
Period size: 14 Copynumber: 4.8 Consensus size: 13
3107785 TAGTTTATAA
*
3107795 AAACCTTAAATCCT
1 AAACCCTAAA-CCT
*
3107809 AAATCCTAAACCT
1 AAACCCTAAACCT
* *
3107822 AAACCATAAA-CA
1 AAACCCTAAACCT
3107834 ATAACCCATAAACCTT
1 A-AACCC-TAAACC-T
3107850 AAACCCTAAA
1 AAACCCTAAA
3107860 TACTATACAT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
12 2 0.05
13 15 0.38
14 16 0.40
15 6 0.15
16 1 0.03
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (13 bp):
AAACCCTAAACCT
Found at i:3107969 original size:18 final size:17
Alignment explanation
Indices: 3107940--3108021 Score: 67
Period size: 18 Copynumber: 4.6 Consensus size: 17
3107930 TTATAGTACA
*
3107940 TATATGTATAAACTATG
1 TATATATATAAACTATG
*
3107957 TATAGTATATAAAACTATC
1 TATA-TATAT-AAACTATG
*
3107976 TATATATATATATA-TATA
1 TATATATATA-A-ACTATG
*
3107994 TATATATATAACCTATAG
1 TATATATATAAACTAT-G
*
3108012 TATATGTATA
1 TATATATATA
3108022 TATATAATCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
17 9 0.17
18 32 0.60
19 12 0.23
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (17 bp):
TATATATATAAACTATG
Found at i:3107981 original size:2 final size:2
Alignment explanation
Indices: 3107976--3108027 Score: 61
Period size: 2 Copynumber: 26.0 Consensus size: 2
3107966 TAAAACTATC
** *
3107976 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A CC TA TA GTA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
3108018 TA TA TA TA TA
1 TA TA TA TA TA
3108028 ATCTATTTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
1 1 0.02
2 40 0.93
3 2 0.05
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:3108028 original size:24 final size:22
Alignment explanation
Indices: 3107976--3108055 Score: 87
Period size: 24 Copynumber: 3.7 Consensus size: 22
3107966 TAAAACTATC
*
3107976 TATATAT-A-TATATATATATA
1 TATATATAACTATATATATGTA
3107996 TATATATAACCTATAGTATATGTA
1 TATATATAA-CTATA-TATATGTA
*
3108020 TATATATAATCTATTTATATGT-
1 TATATATAA-CTATATATATGTA
3108042 TATATA-AACTATAT
1 TATATATAACTATAT
3108056 GTGTAACTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
20 12 0.23
21 3 0.06
22 6 0.12
23 11 0.21
24 20 0.38
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (22 bp):
TATATATAACTATATATATGTA
Found at i:3108090 original size:22 final size:21
Alignment explanation
Indices: 3108063--3108202 Score: 117
Period size: 22 Copynumber: 6.5 Consensus size: 21
3108053 TATGTGTAAC
3108063 TATAGTTTATATTAGTGTACTA
1 TATAGTTTATATTA-TGTACTA
* * *
3108085 TATAGTTTATACTT-TATAATC
1 TATAGTTTATA-TTATGTACTA
* * *
3108106 TATAGTATATAATT-TATA-AA
1 TATAGTTTAT-ATTATGTACTA
3108126 CTATAG-TTATATTAATGTACTA
1 -TATAGTTTATATT-ATGTACTA
*
3108148 TATAGTTTATATTAATGTATTA
1 TATAGTTTATATT-ATGTACTA
3108170 TATAGTTTATATTAGTGTACTA
1 TATAGTTTATATTA-TGTACTA
*
3108192 CATAGTTTATA
1 TATAGTTTATA
3108203 CTTTATAACC
Statistics
Matches: 98, Mismatches: 12, Indels: 16
0.78 0.10 0.13
Matches are distributed among these distances:
19 3 0.03
20 3 0.03
21 33 0.34
22 57 0.58
23 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.49
Consensus pattern (21 bp):
TATAGTTTATATTATGTACTA
Found at i:3108228 original size:21 final size:21
Alignment explanation
Indices: 3108199--3108249 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
3108189 CTACATAGTT
*
3108199 TATACTTTATAACCTATAATA
1 TATAATTTATAACCTATAATA
*
3108220 TATAATTTATAACCTATAGTA
1 TATAATTTATAACCTATAATA
*
3108241 TATATTTTA
1 TATAATTTA
3108250 AAGATCCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (21 bp):
TATAATTTATAACCTATAATA
Found at i:3109908 original size:23 final size:24
Alignment explanation
Indices: 3109877--3109930 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 24
3109867 TTATTTTTTC
*
3109877 TTTACATAAATCAAATTATA-TAA
1 TTTACATAAATCAAACTATATTAA
* *
3109900 TTTATATAAATTAAACTATATTAA
1 TTTACATAAATCAAACTATATTAA
3109924 TTTACAT
1 TTTACAT
3109931 TTAATCATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (24 bp):
TTTACATAAATCAAACTATATTAA
Found at i:3110207 original size:16 final size:16
Alignment explanation
Indices: 3110165--3110201 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
3110155 CCATGGTAAT
3110165 ATAT-AAGTCAGATAA
1 ATATCAAGTCAGATAA
*
3110180 ATGTCAAGTCAGATAA
1 ATATCAAGTCAGATAA
3110196 ATATCA
1 ATATCA
3110202 GATCAGGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.49, C:0.11, G:0.14, T:0.27
Consensus pattern (16 bp):
ATATCAAGTCAGATAA
Found at i:3114550 original size:31 final size:30
Alignment explanation
Indices: 3114515--3114582 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
3114505 ACCTAATGAG
*
3114515 ACGATAGTCCAAGTGAAAAATACTTAATAAA
1 ACGATAATCCAAGTGAAAAA-ACTTAATAAA
** **
3114546 ACGATAATGTAAGTGACCAAACTTAATAAA
1 ACGATAATCCAAGTGAAAAAACTTAATAAA
*
3114576 ACAATAA
1 ACGATAA
3114583 CGTAAGTGAC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.22
Consensus pattern (30 bp):
ACGATAATCCAAGTGAAAAAACTTAATAAA
Found at i:3114572 original size:30 final size:30
Alignment explanation
Indices: 3114536--3114593 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
3114526 AGTGAAAAAT
* *
3114536 ACTTAATAAAACGATAATGTAAGTGACCAA
1 ACTTAATAAAACAATAACGTAAGTGACCAA
3114566 ACTTAATAAAACAATAACGTAAGTGACC
1 ACTTAATAAAACAATAACGTAAGTGACC
3114594 CAAAGATATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (30 bp):
ACTTAATAAAACAATAACGTAAGTGACCAA
Found at i:3115651 original size:28 final size:28
Alignment explanation
Indices: 3115591--3115651 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
3115581 ACTGCATCTT
* *
3115591 TTATTTTTATTTATTTTTATTTTGGCAC
1 TTATTTTTATTTATTTTGATTTTAGCAC
* *
3115619 GTATTTTTATTTTATTTTGA-TTTAGTAC
1 TTATTTTTA-TTTATTTTGATTTTAGCAC
3115647 TTATT
1 TTATT
3115652 AGTCTTAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.20, C:0.05, G:0.08, T:0.67
Consensus pattern (28 bp):
TTATTTTTATTTATTTTGATTTTAGCAC
Found at i:3115816 original size:18 final size:17
Alignment explanation
Indices: 3115781--3115861 Score: 55
Period size: 16 Copynumber: 4.9 Consensus size: 17
3115771 TAGATCTTTG
*
3115781 TATTTTAATTTTCTTTAT
1 TATTTTAATTTT-ATTAT
3115799 TATTTGTAATTTTATTAT
1 TATTT-TAATTTTATTAT
** *
3115817 T-TTTTAAAATT-TTAG
1 TATTTTAATTTTATTAT
*
3115832 TA-TTT-ATTTAATTTAT
1 TATTTTAATTTTA-TTAT
3115848 T-TTTTAATTTTATT
1 TATTTTAATTTTATT
3115862 TTTAATTAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
14 2 0.04
15 7 0.15
16 14 0.29
17 8 0.17
18 10 0.21
19 7 0.15
ACGTcount: A:0.27, C:0.01, G:0.02, T:0.69
Consensus pattern (17 bp):
TATTTTAATTTTATTAT
Found at i:3115859 original size:13 final size:13
Alignment explanation
Indices: 3115832--3115868 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
3115822 AAAATTTTAG
3115832 TATTTATTTAA-TT
1 TATTT-TTTAATTT
3115845 TATTTTTTAATTT
1 TATTTTTTAATTT
3115858 TA-TTTTTAATT
1 TATTTTTTAATT
3115869 AGGATTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 14 0.61
13 9 0.39
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TATTTTTTAATTT
Found at i:3127674 original size:9 final size:9
Alignment explanation
Indices: 3127660--3127693 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
3127650 ATTTCCAAGG
3127660 TTTTTTTTC
1 TTTTTTTTC
3127669 TTTTTTTTC
1 TTTTTTTTC
3127678 TTTTTCTTTC
1 TTTTT-TTTC
3127688 TTTTTT
1 TTTTTT
3127694 CAATTTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:3127675 original size:10 final size:10
Alignment explanation
Indices: 3127660--3127693 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
3127650 ATTTCCAAGG
3127660 TTTTTTTTC-
1 TTTTTTTTCT
3127669 TTTTTTTTCT
1 TTTTTTTTCT
*
3127679 TTTTCTTTCT
1 TTTTTTTTCT
3127689 TTTTT
1 TTTTT
3127694 CAATTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:3127683 original size:15 final size:16
Alignment explanation
Indices: 3127663--3127692 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3127653 TCCAAGGTTT
3127663 TTTTTCTTT-TTTTTC
1 TTTTTCTTTCTTTTTC
3127678 TTTTTCTTTCTTTTT
1 TTTTTCTTTCTTTTT
3127693 TCAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTCTTTCTTTTTC
Found at i:3127700 original size:19 final size:18
Alignment explanation
Indices: 3127660--3127702 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
3127650 ATTTCCAAGG
***
3127660 TTTTTTTTCTTTTTTTTC
1 TTTTTTTTCTTTTTTCAA
3127678 TTTTTCTTTCTTTTTTCAA
1 TTTTT-TTTCTTTTTTCAA
3127697 TTTTTT
1 TTTTTT
3127703 CAATTTCCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTTTTCTTTTTTCAA
Found at i:3128442 original size:133 final size:133
Alignment explanation
Indices: 3128257--3129356 Score: 1684
Period size: 133 Copynumber: 8.3 Consensus size: 133
3128247 GATTGTTCAC
* *
3128257 CTTTTTGCTCGATTCTATCACAGAA-GAAGGTAGATCAGCATGGACATCTCGTTCGATTTCATCA
1 CTTTTTGCTCGATTCTATCACAGAATG-AGGTAGATCAGCATCGACATCTCGTTCGATTCCATCA
* * * * *
3128321 CAAAAAGAGGTGGATCGACATTTTTATCTTCCCTTAAATCCATCGCAGAAAGAGTTGGAT-TACT
65 CAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAAC-
3128385 GTCAA
129 GTCAA
* * * * *
3128390 CATTTTGCTCGATTCTATCACAGAATGAGGTAAATCAACATCGACATCTCGTTCAATTTCATCAC
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
* * *
3128455 AAAAAGAGGTGGATCGACATTTTTATCTTCGCTTAAATCCATCGCAGAAGGAGTTGGAT-ATGCG
66 AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCA-ACG
3128519 TCAA
130 TCAA
* *
3128523 CTTTTTGCTCGATTCTATCACATAATAAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
* * *
3128588 AAAAGGAGGTGAATCGAAATTTTTATCTTCGCTCAAATCCATCACAGAAGGAGTTGGATCAACGT
66 AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGT
3128653 CAA
131 CAA
3128656 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
* **
3128721 TAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGTGT
66 AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGT
3128786 CAA
131 CAA
* * **
3128789 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATTAGTATCGGTATCTCGTTCGATTCCATCAC
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
* * *
3128854 AAAAGGAGGTGGATCGACATTTTTATCTTTGCTCAAATCTATCGCAGAATGAGTTGGATCAACGT
66 AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGT
3128919 CAA
131 CAA
* * * * * *
3128922 ATTTTTGCTCGATTCTATCACAAAAGGAGGTAGATCAACATCGCCATCTCGTTCGATTCCATCAT
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
* * *
3128987 AAAAAGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGTAGAAAGAGTTGGATCAACGT
66 AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGT
3129052 CAA
131 CAA
* *
3129055 CCTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
* **
3129120 TAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGTGT
66 AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGT
3129185 CAA
131 CAA
* * *
3129188 CTTTTTGCTTGATTCTATCACAGAAAGAGGTAGATCATCATCGACATCTCGTTCGATTCCATCAC
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
* *
3129253 AAAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGT
66 AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGT
3129318 CAA
131 CAA
* * *
3129321 CTTTTAGCTCGATTCTATCACAGAAAGAGGTGGATC
1 CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATC
3129357 GACATTCAAA
Statistics
Matches: 888, Mismatches: 76, Indels: 6
0.92 0.08 0.01
Matches are distributed among these distances:
133 885 1.00
134 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (133 bp):
CTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCAC
AAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGT
CAA
Found at i:3129379 original size:33 final size:33
Alignment explanation
Indices: 3129337--3129627 Score: 309
Period size: 33 Copynumber: 8.8 Consensus size: 33
3129327 GCTCGATTCT
3129337 ATCACAGAAAGAGGTGGATCGACATTCAAATCC
1 ATCACAGAAAGAGGTGGATCGACATTCAAATCC
3129370 ATCACAGAAAGAGGTGGATCGACATTTCAAATCC
1 ATCACAGAAAGAGGTGGATCGACA-TTCAAATCC
* * **
3129404 ATCACAGAAAGAGGCGGATCAACATTCAAATTT
1 ATCACAGAAAGAGGTGGATCGACATTCAAATCC
* *
3129437 ATCACAGAAAGAGGTAGATCGACA-TCTTAATCTC
1 ATCACAGAAAGAGGTGGATCGACATTC-AAATC-C
*
3129471 -TCACAGAAAGATGTGGATCGACATTTCAAATCC
1 ATCACAGAAAGAGGTGGATCGACA-TTCAAATCC
* * *
3129504 ATCACAGAAAGAGGCGGATCAACATTCAAATTC
1 ATCACAGAAAGAGGTGGATCGACATTCAAATCC
* * *
3129537 ATCATAGAAAGAGGTGGATCGACA-TCTTAATCT
1 ATCACAGAAAGAGGTGGATCGACATTC-AAATCC
* * * ** *
3129570 ATCACAGGAGGAGTTGGATCGACATTTTAATTC
1 ATCACAGAAAGAGGTGGATCGACATTCAAATCC
* * * *
3129603 ATCACATAAGGAAGTGGATTGACAT
1 ATCACAGAAAGAGGTGGATCGACAT
3129628 CTCCAACGAA
Statistics
Matches: 215, Mismatches: 35, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
32 4 0.02
33 153 0.71
34 56 0.26
35 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (33 bp):
ATCACAGAAAGAGGTGGATCGACATTCAAATCC
Found at i:3129445 original size:67 final size:67
Alignment explanation
Indices: 3129337--3129627 Score: 315
Period size: 67 Copynumber: 4.4 Consensus size: 67
3129327 GCTCGATTCT
3129337 ATCACAGAAAGAGGTGGATCGACATTCAAATCCATCACAGAAAGAGGTGGATCGACATTTCAAAT
1 ATCACAGAAAGAGGTGGATCGACATTCAAATCCATCACAGAAAGAGGTGGATCGACATTTCAAAT
3129402 CC
66 CC
* * ** *
3129404 ATCACAGAAAGAGGCGGATCAACATTCAAATTTATCACAGAAAGAGGTAGATCGACATCTT--AA
1 ATCACAGAAAGAGGTGGATCGACATTCAAATCCATCACAGAAAGAGGTGGATCGACAT-TTCAAA
3129467 TCTC
65 TC-C
* * *
3129471 -TCACAGAAAGATGTGGATCGACATTTCAAATCCATCACAGAAAGAGGCGGATCAACA-TTCAAA
1 ATCACAGAAAGAGGTGGATCGACA-TTCAAATCCATCACAGAAAGAGGTGGATCGACATTTCAAA
*
3129534 TTC
65 TCC
* * * * * * *
3129537 ATCATAGAAAGAGGTGGATCGACA-TCTTAATCTATCACAGGAGGAGTTGGATCGACATTT-TAA
1 ATCACAGAAAGAGGTGGATCGACATTC-AAATCCATCACAGAAAGAGGTGGATCGACATTTCAAA
*
3129600 TTC
65 TCC
* * * *
3129603 ATCACATAAGGAAGTGGATTGACAT
1 ATCACAGAAAGAGGTGGATCGACAT
3129628 CTCCAACGAA
Statistics
Matches: 186, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
65 4 0.02
66 72 0.39
67 108 0.58
68 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (67 bp):
ATCACAGAAAGAGGTGGATCGACATTCAAATCCATCACAGAAAGAGGTGGATCGACATTTCAAAT
CC
Found at i:3129509 original size:100 final size:99
Alignment explanation
Indices: 3129336--3129596 Score: 400
Period size: 100 Copynumber: 2.6 Consensus size: 99
3129326 AGCTCGATTC
*
3129336 TATCACAGAAAGAGGTGGATCGACAT-TCAAATC-CATCACAGAAAGAGGTGGATCGACATTTCA
1 TATCACAGAAAGAGGTGGATCGACATCT-TAATCTC-TCACAGAAAGA-GTGGATCGACATTTCA
3129399 AATCCATCACAGAAAGAGGCGGATCAACATTCAAATT
63 AATCCATCACAGAAAGAGGCGGATCAACATTCAAATT
*
3129436 TATCACAGAAAGAGGTAGATCGACATCTTAATCTCTCACAGAAAGATGTGGATCGACATTTCAAA
1 TATCACAGAAAGAGGTGGATCGACATCTTAATCTCTCACAGAAAGA-GTGGATCGACATTTCAAA
3129501 TCCATCACAGAAAGAGGCGGATCAACATTCAAATT
65 TCCATCACAGAAAGAGGCGGATCAACATTCAAATT
* * * * *
3129536 CATCATAGAAAGAGGTGGATCGACATCTTAATCTATCACAGGAGGAGTTGGATCGACATTT
1 TATCACAGAAAGAGGTGGATCGACATCTTAATCTCTCACAGAAAGAG-TGGATCGACATTT
3129597 TAATTCATCA
Statistics
Matches: 149, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
99 1 0.01
100 146 0.98
101 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (99 bp):
TATCACAGAAAGAGGTGGATCGACATCTTAATCTCTCACAGAAAGAGTGGATCGACATTTCAAAT
CCATCACAGAAAGAGGCGGATCAACATTCAAATT
Found at i:3130734 original size:28 final size:28
Alignment explanation
Indices: 3130674--3130734 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
3130664 ACTGCATCTT
* *
3130674 TTATTTTTATTTATTTTTATTTTGGCAC
1 TTATTTTTATTTATTTTGATTTTAGCAC
* *
3130702 ATATTTTTATTTTATTTTGA-TTTAGTAC
1 TTATTTTTA-TTTATTTTGATTTTAGCAC
3130730 TTATT
1 TTATT
3130735 AGTCTTAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (28 bp):
TTATTTTTATTTATTTTGATTTTAGCAC
Found at i:3130940 original size:19 final size:19
Alignment explanation
Indices: 3130869--3130940 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 19
3130859 CTTTGTATTT
*
3130869 TAATTTTCTTTATTA-TTTG
1 TAATTTTATTT-TTATTTTG
*
3130888 TAATTTTTATTATTATTTT-
1 TAA-TTTTATTTTTATTTTG
*
3130907 TAATTTTAGTATTTATTTTG
1 TAATTTTA-TTTTTATTTTG
3130927 TAATTTTATTTTTA
1 TAATTTTATTTTTA
3130941 ATTAGGATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 5 0.11
19 22 0.50
20 17 0.39
ACGTcount: A:0.25, C:0.01, G:0.04, T:0.69
Consensus pattern (19 bp):
TAATTTTATTTTTATTTTG
Found at i:3131817 original size:21 final size:22
Alignment explanation
Indices: 3131791--3131831 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3131781 ATGACCTCAT
*
3131791 CCACTAA-ATTTTTAGATTTTC
1 CCACTAATATGTTTAGATTTTC
3131812 CCACTAATATGTTTAGATTT
1 CCACTAATATGTTTAGATTT
3131832 AACTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.29, C:0.17, G:0.07, T:0.46
Consensus pattern (22 bp):
CCACTAATATGTTTAGATTTTC
Found at i:3133971 original size:23 final size:23
Alignment explanation
Indices: 3133944--3134034 Score: 73
Period size: 23 Copynumber: 4.0 Consensus size: 23
3133934 ATATCATAAG
3133944 TAAATTTTACATTATTTTTATTA
1 TAAATTTTACATTATTTTTATTA
* * *
3133967 TAAATTTAATATTATTTATT-TTT
1 TAAATTTTACATTATTT-TTATTA
** *
3133990 TAGTTGTTTTCTATTATTTTTATTA
1 TAAAT-TTTAC-ATTATTTTTATTA
3134015 TAAA-TTTA-A-TATTTTTATTA
1 TAAATTTTACATTATTTTTATTA
3134035 CAAGTAAGAT
Statistics
Matches: 52, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
20 11 0.21
21 1 0.02
23 23 0.44
24 6 0.12
25 11 0.21
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (23 bp):
TAAATTTTACATTATTTTTATTA
Found at i:3134156 original size:20 final size:20
Alignment explanation
Indices: 3134128--3134168 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
3134118 AAGTAGATTT
* *
3134128 TCTATTATTTTTATTATAAA
1 TCTAATATTTTTATTACAAA
3134148 TCTAATATTTTTATTACAAA
1 TCTAATATTTTTATTACAAA
3134168 T
1 T
3134169 AAAATAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (20 bp):
TCTAATATTTTTATTACAAA
Found at i:3134174 original size:20 final size:20
Alignment explanation
Indices: 3134133--3134174 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
3134123 GATTTTCTAT
* **
3134133 TATTTTTATTATAAATCTAA
1 TATTTTTATTACAAATAAAA
3134153 TATTTTTATTACAAATAAAA
1 TATTTTTATTACAAATAAAA
3134173 TA
1 TA
3134175 AGTAAACTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTTTATTACAAATAAAA
Found at i:3136358 original size:17 final size:18
Alignment explanation
Indices: 3136319--3136358 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
3136309 ATCTATTATC
* *
3136319 ATTTATTAATAAATTAGT
1 ATTTTTTAATAAAATAGT
3136337 ATTTTTTAATAAAATA-T
1 ATTTTTTAATAAAATAGT
3136354 ATTTT
1 ATTTT
3136359 AAGATAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
ATTTTTTAATAAAATAGT
Found at i:3136672 original size:16 final size:16
Alignment explanation
Indices: 3136653--3136745 Score: 55
Period size: 16 Copynumber: 6.4 Consensus size: 16
3136643 AACCACTCAA
3136653 TTAATTAAATACTTAG
1 TTAATTAAATACTTAG
*
3136669 TTAATT---T--TTAA
1 TTAATTAAATACTTAG
3136680 TTAATTAAATACTTAG
1 TTAATTAAATACTTAG
3136696 TTAATT---T--TTATG
1 TTAATTAAATACTTA-G
* * *
3136708 ATAATTGAACACTTCA-
1 TTAATTAAATACTT-AG
3136724 TTAATTAAATACTTAG
1 TTAATTAAATACTTAG
3136740 TTAATT
1 TTAATT
3136746 TTTTTATAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 26
0.63 0.08 0.29
Matches are distributed among these distances:
11 12 0.21
12 6 0.11
13 2 0.04
14 1 0.02
15 1 0.02
16 32 0.56
17 2 0.04
18 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.48
Consensus pattern (16 bp):
TTAATTAAATACTTAG
Found at i:3136682 original size:27 final size:27
Alignment explanation
Indices: 3136651--3136705 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
3136641 TTAACCACTC
3136651 AATTAATTAAATACTTAGTTAATTTTT
1 AATTAATTAAATACTTAGTTAATTTTT
3136678 AATTAATTAAATACTTAGTTAATTTTT
1 AATTAATTAAATACTTAGTTAATTTTT
3136705 A
1 A
3136706 TGATAATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (27 bp):
AATTAATTAAATACTTAGTTAATTTTT
Found at i:3137115 original size:154 final size:155
Alignment explanation
Indices: 3136946--3137266 Score: 619
Period size: 155 Copynumber: 2.1 Consensus size: 155
3136936 TAAATATTTG
3136946 ATTTAAAATTATTGTTTAAAAATATATCAATTATTAAATTTTGTTATAGATTAAAAAAGAATGAC
1 ATTTAAAATTATTGTTTAAAAATATATCAATTATT-AATTTTGTTATAGATTAAAAAAGAATGAC
3137011 AATATAAATAATGAG-AAT-TTTTTTTAAATATCTCAATAATATTAAGTCAAATAAAACATTATT
65 AATATAAATAATGAGAAATATTTTTTTAAATATCTCAATAATATTAAGTCAAATAAAACATTATT
3137074 TATTAATTTAATATATATATATATAT
130 TATTAATTTAATATATATATATATAT
3137100 ATTTAAAATTATTGTTTAAAAATATATCAATTATTAATTTTGTTATAGATTAAAAAAGAATGACA
1 ATTTAAAATTATTGTTTAAAAATATATCAATTATTAATTTTGTTATAGATTAAAAAAGAATGACA
3137165 ATATAAATAATGAGAAATATTTTTTTAAATATCTCAATAATATTAAGTCAAATAAAACATTATTT
66 ATATAAATAATGAGAAATATTTTTTTAAATATCTCAATAATATTAAGTCAAATAAAACATTATTT
3137230 ATTAATTTAATATATATATATATAT
131 ATTAATTTAATATATATATATATAT
3137255 ATTTAAAATTAT
1 ATTTAAAATTAT
3137267 GTGTATCAAC
Statistics
Matches: 165, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
153 44 0.27
154 38 0.23
155 83 0.50
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (155 bp):
ATTTAAAATTATTGTTTAAAAATATATCAATTATTAATTTTGTTATAGATTAAAAAAGAATGACA
ATATAAATAATGAGAAATATTTTTTTAAATATCTCAATAATATTAAGTCAAATAAAACATTATTT
ATTAATTTAATATATATATATATAT
Found at i:3140415 original size:35 final size:35
Alignment explanation
Indices: 3140369--3140441 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
3140359 ACACATCATA
3140369 TAAGGCCCTGAGCACAAAGCCAAGGAACCGGTAAG
1 TAAGGCCCTGAGCACAAAGCCAAGGAACCGGTAAG
* * **
3140404 TAAGGCCCTGAGCACACAGCCGAGGAACCTTTAAG
1 TAAGGCCCTGAGCACAAAGCCAAGGAACCGGTAAG
3140439 TAA
1 TAA
3140442 TCTTCCTCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.26, G:0.26, T:0.12
Consensus pattern (35 bp):
TAAGGCCCTGAGCACAAAGCCAAGGAACCGGTAAG
Found at i:3140551 original size:24 final size:24
Alignment explanation
Indices: 3140524--3140586 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
3140514 TTCAAATCAA
*
3140524 GTATCATATCAGAATCCAGGTCAT
1 GTATCATATCAGAATCCAGGTCAG
*
3140548 GTATCAGATCAGAATCCAGGTCAG
1 GTATCATATCAGAATCCAGGTCAG
*
3140572 GTATCATAACAGAAT
1 GTATCATATCAGAAT
3140587 TCAAATTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (24 bp):
GTATCATATCAGAATCCAGGTCAG
Found at i:3141578 original size:9 final size:9
Alignment explanation
Indices: 3141564--3141589 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
3141554 CCATAAGGGT
3141564 ATTTTGGTC
1 ATTTTGGTC
3141573 ATTTTGGTC
1 ATTTTGGTC
3141582 ATTTTGGT
1 ATTTTGGT
3141590 TTTCAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.08, G:0.23, T:0.58
Consensus pattern (9 bp):
ATTTTGGTC
Found at i:3143091 original size:13 final size:13
Alignment explanation
Indices: 3143073--3143102 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
3143063 GCCGGTCAAC
3143073 GGTCAACGGGTCG
1 GGTCAACGGGTCG
3143086 GGTCAACGGGTCG
1 GGTCAACGGGTCG
3143099 GGTC
1 GGTC
3143103 GGGTTATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.47, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:3144435 original size:20 final size:21
Alignment explanation
Indices: 3144410--3144461 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
3144400 TTTTTCCAAT
*
3144410 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
3144430 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
3144451 TCGCAATGCGA
1 TCGCAATGCGA
3144462 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:3144475 original size:20 final size:20
Alignment explanation
Indices: 3144450--3144563 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
3144440 AATTGGGAAA
*
3144450 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
3144470 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
3144490 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
3144511 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
3144531 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
3144551 TTCGCAACGCGAT
1 ATCGCAACGCGAT
3144564 TTACATAGCG
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:3144494 original size:61 final size:61
Alignment explanation
Indices: 3144447--3144563 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
3144437 GCGAATTGGG
* * * * *
3144447 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
3144508 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
3144564 TTACATAGCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:3145150 original size:19 final size:19
Alignment explanation
Indices: 3145128--3145305 Score: 151
Period size: 19 Copynumber: 9.7 Consensus size: 19
3145118 TAATCGCAAC
*
3145128 GCGATTTTTATTTCGCGTT
1 GCGATTTTCATTTCGCGTT
3145147 GCGATTTTCATTTCGCGTT
1 GCGATTTTCATTTCGCGTT
*
3145166 GCGATTTTTATTTCGCGGTT
1 GCGATTTTCATTTCGC-GTT
3145186 GCGATTTTCATTTCGCGTT
1 GCGATTTTCATTTCGCGTT
* *
3145205 GCGATTGTC---T-G-GTC
1 GCGATTTTCATTTCGCGTT
**
3145219 GCGATAGTCATTTCGCGTT
1 GCGATTTTCATTTCGCGTT
*
3145238 GCGA--TTC---TCTCGTT
1 GCGATTTTCATTTCGCGTT
**
3145252 GCGATAGTCATTTTTCGCGTT
1 GCGATTTTCA--TTTCGCGTT
* *
3145273 GCGATTCTCATTATCTCGTT
1 GCGATTTTCATT-TCGCGTT
3145293 GCGATTTTCATTT
1 GCGATTTTCATTT
3145306 AACCAAAAGA
Statistics
Matches: 130, Mismatches: 15, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
14 20 0.15
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 53 0.41
20 35 0.27
21 14 0.11
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (19 bp):
GCGATTTTCATTTCGCGTT
Found at i:3145198 original size:39 final size:38
Alignment explanation
Indices: 3145128--3145210 Score: 157
Period size: 39 Copynumber: 2.2 Consensus size: 38
3145118 TAATCGCAAC
3145128 GCGATTTTTATTTCGCGTTGCGATTTTCATTTCGCGTT
1 GCGATTTTTATTTCGCGTTGCGATTTTCATTTCGCGTT
3145166 GCGATTTTTATTTCGCGGTTGCGATTTTCATTTCGCGTT
1 GCGATTTTTATTTCGC-GTTGCGATTTTCATTTCGCGTT
3145205 GCGATT
1 GCGATT
3145211 GTCTGGTCGC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 16 0.36
39 28 0.64
ACGTcount: A:0.11, C:0.18, G:0.23, T:0.48
Consensus pattern (38 bp):
GCGATTTTTATTTCGCGTTGCGATTTTCATTTCGCGTT
Found at i:3145221 original size:39 final size:39
Alignment explanation
Indices: 3145140--3145221 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 39
3145130 GATTTTTATT
* **
3145140 TCGC-GTTGCGATTTTCATTTCGCGTTGCGATTTTTATT
1 TCGCGGTTGCGATTTTCATTTCGCGTTGCGATTTCTAGG
3145178 TCGCGGTTGCGATTTTCATTTCGCGTTGCGATTGTCT-GG
1 TCGCGGTTGCGATTTTCATTTCGCGTTGCGATT-TCTAGG
3145217 TCGCG
1 TCGCG
3145222 ATAGTCATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
38 4 0.10
39 33 0.85
40 2 0.05
ACGTcount: A:0.09, C:0.21, G:0.27, T:0.44
Consensus pattern (39 bp):
TCGCGGTTGCGATTTTCATTTCGCGTTGCGATTTCTAGG
Found at i:3145275 original size:35 final size:33
Alignment explanation
Indices: 3145193--3145281 Score: 133
Period size: 33 Copynumber: 2.6 Consensus size: 33
3145183 GTTGCGATTT
* *
3145193 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
3145226 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
3145259 TCATTTTTCGCGTTGCGATTCTC
1 TCA--TTTCGCGTTGCGATTCTC
3145282 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
33 33 0.65
35 18 0.35
ACGTcount: A:0.11, C:0.24, G:0.25, T:0.40
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:3145283 original size:21 final size:21
Alignment explanation
Indices: 3145248--3145306 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
3145238 GCGATTCTCT
** *
3145248 CGTTGCGATAGTCATTTTTCG
1 CGTTGCGATTCTCATTTATCG
*
3145269 CGTTGCGATTCTCA-TTATCT
1 CGTTGCGATTCTCATTTATCG
*
3145289 CGTTGCGATTTTCATTTA
1 CGTTGCGATTCTCATTTA
3145307 ACCAAAAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.15, C:0.20, G:0.19, T:0.46
Consensus pattern (21 bp):
CGTTGCGATTCTCATTTATCG
Found at i:3145877 original size:24 final size:24
Alignment explanation
Indices: 3145843--3145896 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
3145833 CTGAAACATC
* *
3145843 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
3145867 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
3145891 ATCAAA
1 ATCAAA
3145897 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:3146978 original size:20 final size:20
Alignment explanation
Indices: 3146953--3147003 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
3146943 ATTCATTTGA
3146953 CTATCGCAACGCAAAAATGG
1 CTATCGCAACGCAAAAATGG
*
3146973 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCAAAAATGG
*
3146993 CAATCGCAACG
1 CTATCGCAACG
3147004 AGAAAATCGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (20 bp):
CTATCGCAACGCAAAAATGG
Found at i:3147008 original size:20 final size:20
Alignment explanation
Indices: 3146955--3147016 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
3146945 TCATTTGACT
*
3146955 ATCGCAACGCA-AAAATGGCT
1 ATCGCAACG-AGAAAATGGCA
*
3146975 ATCGCAACGCGAAAATGGCA
1 ATCGCAACGAGAAAATGGCA
*
3146995 ATCGCAACGAGAAAATCGCA
1 ATCGCAACGAGAAAATGGCA
3147015 AT
1 AT
3147017 GCGAAATGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.42, C:0.24, G:0.21, T:0.13
Consensus pattern (20 bp):
ATCGCAACGAGAAAATGGCA
Found at i:3147053 original size:14 final size:14
Alignment explanation
Indices: 3147034--3147087 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
3147024 GAAAATCGCA
3147034 TTGCGATTTTCTCG
1 TTGCGATTTTCTCG
3147048 TTGCGATTTTCATTTCG
1 TTGCGATTTTC---TCG
3147065 CATTGCGATTTTCTCG
1 --TTGCGATTTTCTCG
3147081 TTGCGAT
1 TTGCGAT
3147088 AGCCATTTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
16 3 0.09
17 3 0.09
19 11 0.31
ACGTcount: A:0.11, C:0.20, G:0.20, T:0.48
Consensus pattern (14 bp):
TTGCGATTTTCTCG
Found at i:3147053 original size:33 final size:33
Alignment explanation
Indices: 3147016--3147086 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
3147006 AAAATCGCAA
3147016 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
** ** **
3147049 TGCGATTTTCATTTCGCATTGCGATTTTCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
3147082 TGCGA
1 TGCGA
3147087 TAGCCATTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (33 bp):
TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
Found at i:3147087 original size:33 final size:33
Alignment explanation
Indices: 3147029--3147106 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
3147019 GAAATGAAAA
***
3147029 TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
3147062 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
*
3147095 TCGCGTTGCGAT
1 TCGCATTGCGAT
3147107 AGTCTGTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.13, C:0.23, G:0.22, T:0.42
Consensus pattern (33 bp):
TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
Found at i:3147213 original size:14 final size:14
Alignment explanation
Indices: 3147194--3147230 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
3147184 CATCAATTAA
3147194 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
3147208 ACAAATCATCTTTT
1 ACAAATCAACATTT
3147222 ACAAATCAA
1 ACAAATCAA
3147231 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:3149124 original size:19 final size:20
Alignment explanation
Indices: 3149097--3149152 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
3149087 GAAACTTAAA
3149097 ATCGCAACGCGAAATGA-CT
1 ATCGCAACGCGAAATGAGCT
*
3149116 ATCGTAACGCGGAAAT-AGCT
1 ATCGCAACGC-GAAATGAGCT
*
3149136 ATCGCAATGCGAAATGA
1 ATCGCAACGCGAAATGA
3149153 AAATCGCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCGAAATGAGCT
Found at i:3149137 original size:20 final size:19
Alignment explanation
Indices: 3149097--3149163 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
3149087 GAAACTTAAA
3149097 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
3149116 ATCGTAACGCGGAAAT-AGCT
1 ATCGCAACGC-GAAATGA-CT
* **
3149136 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
3149155 ATCGCAACG
1 ATCGCAACG
3149164 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 23 0.59
20 16 0.41
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:3149158 original size:19 final size:18
Alignment explanation
Indices: 3149136--3149193 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 18
3149126 GGAAATAGCT
3149136 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
3149155 ATCGCAA-CG--A-CAAA
1 ATCGCAAGCGAAATGAAA
3149169 ATCGCAACGCGAAATG-AA
1 ATCGCAA-GCGAAATGAAA
3149187 ATCGCAA
1 ATCGCAA
3149194 CGACAAAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
16 2 0.06
17 2 0.06
18 10 0.31
19 7 0.22
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:3149171 original size:14 final size:14
Alignment explanation
Indices: 3149152--3149209 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
3149142 ATGCGAAATG
3149152 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
3149166 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
3149182 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
3149198 AAAATCGCAACG
1 AAAATCGCAACG
3149210 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:3149194 original size:32 final size:33
Alignment explanation
Indices: 3149136--3149214 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
3149126 GGAAATAGCT
*
3149136 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
3149169 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
3149201 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
3149215 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:3149243 original size:19 final size:17
Alignment explanation
Indices: 3149221--3149316 Score: 69
Period size: 19 Copynumber: 5.6 Consensus size: 17
3149211 GAAACACAAA
3149221 TCGCATTGCGATTTTCATT
1 TCGC-TTGCGA-TTTCATT
*
3149240 TCGCGTTGCGATTT--TG
1 TCGC-TTGCGATTTCATT
3149256 TCG-TTGCGATTTCATT
1 TCGCTTGCGATTTCATT
* *
3149272 TCGTGTTGCGATTT--TG
1 TCG-CTTGCGATTTCATT
3149288 TCG-TTGCGATTTTCATT
1 TCGCTTGCGA-TTTCATT
3149305 TCGCATTGCGAT
1 TCGC-TTGCGAT
3149317 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
14 15 0.24
15 3 0.05
16 12 0.19
17 4 0.06
18 13 0.21
19 16 0.25
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (17 bp):
TCGCTTGCGATTTCATT
Found at i:3149262 original size:14 final size:14
Alignment explanation
Indices: 3149243--3149300 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
3149233 TTTCATTTCG
3149243 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
3149257 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
3149273 CGTGTTGCGATTTTGT
1 C--GTTGCGATTTTGT
3149289 CGTTGCGATTTT
1 CGTTGCGATTTT
3149301 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 22 0.58
16 6 0.16
18 10 0.26
ACGTcount: A:0.09, C:0.16, G:0.26, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:3149307 original size:33 final size:33
Alignment explanation
Indices: 3149226--3149316 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
3149216 ACAAATCGCA
3149226 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
3149259 TTGCGA-TTTCATTTCGTGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
3149291 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
3149317 AGCCATTTCC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 31 0.57
33 23 0.43
ACGTcount: A:0.11, C:0.18, G:0.23, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:3149335 original size:20 final size:19
Alignment explanation
Indices: 3149301--3149355 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
3149291 TTGCGATTTT
*
3149301 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
3149320 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
3149340 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
3149356 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:3149869 original size:18 final size:18
Alignment explanation
Indices: 3149843--3149887 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
3149833 GTCGATCAGA
*
3149843 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
3149861 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
3149879 TGATGGCTC
1 TGATGGCTC
3149888 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:3151232 original size:20 final size:20
Alignment explanation
Indices: 3151207--3151249 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
3151197 AATAGTTTTT
3151207 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
*
3151227 GAAAATGAAAATCGCAACGC
1 GAAAATGAAAATCGCAACAC
3151247 GAA
1 GAA
3151250 TTCGACTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:3151553 original size:22 final size:22
Alignment explanation
Indices: 3151526--3151569 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
3151516 GATGGAGATA
3151526 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
3151548 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
3151570 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:3151851 original size:20 final size:20
Alignment explanation
Indices: 3151757--3151851 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
3151747 GATTATGTAT
*
3151757 TATCGCATTGCGAAAGTCAG
1 TATCGCATTGCGATAGTCAG
* * *
3151777 TATCGCGTTGCGAAAGTAAG
1 TATCGCATTGCGATAGTCAG
* * ** * *
3151797 TATCTCGTTGCGATTTTTTAT
1 TATCGCATTGCGA-TAGTCAG
3151818 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTCAG
3151838 TATCGCATTGCGAT
1 TATCGCATTGCGAT
3151852 TTTCCCAATT
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (20 bp):
TATCGCATTGCGATAGTCAG
Found at i:3151869 original size:21 final size:21
Alignment explanation
Indices: 3151840--3151932 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
3151830 ATAGTCAGTA
3151840 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
3151861 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
3151881 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
3151902 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
3151922 TCGCATTGCGA
1 TCGCATTGCGA
3151933 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:3151870 original size:41 final size:41
Alignment explanation
Indices: 3151779--3151913 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
3151769 AAAGTCAGTA
* * * ** *
3151779 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
3151819 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
3151861 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
3151902 TCGCGTTGCGAT
1 TCGCGTTGCGAT
3151914 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:3151914 original size:41 final size:41
Alignment explanation
Indices: 3151840--3151932 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
3151830 ATAGTCAGTA
3151840 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
3151881 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
3151922 TCGCATTGCGA
1 TCGCATTGCGA
3151933 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:3163859 original size:13 final size:13
Alignment explanation
Indices: 3163841--3163880 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
3163831 ATGGTTTGAT
3163841 AATCTTTAAAAAA
1 AATCTTTAAAAAA
3163854 AATCTTTAAAAAA
1 AATCTTTAAAAAA
3163867 AATCTTTAAAAAA
1 AATCTTTAAAAAA
3163880 A
1 A
3163881 GGACGGTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AATCTTTAAAAAA
Done.