Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004260.1 Hibiscus syriacus cultivar Beakdansim tig00009335_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57544

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2363--2408
22
2.1
22
83
0
56
69
4
0
26
1.07
2473--2529
20
2.8
20
92
5
80
54
0
0
45
0.99
2484--2529
20
2.3
20
100
0
92
52
0
0
47
1.00
2975--3043
28
2.4
29
75
17
74
40
0
0
59
0.97
3047--3075
15
1.9
15
100
0
58
37
0
0
62
0.96
3204--3261
21
2.8
21
97
0
107
46
22
3
27
1.68
5318--5378
17
3.5
18
76
14
74
37
0
3
59
1.14
5310--5393
35
2.4
35
94
2
152
34
0
4
60
1.18
5333--5391
18
3.3
18
75
13
68
32
0
5
62
1.17
5970--6002
14
2.3
15
89
5
50
24
3
15
57
1.52
6201--6320
45
2.7
44
82
2
141
34
7
17
40
1.78
6226--6338
45
2.7
40
75
13
120
34
7
17
40
1.77
6467--6763
58
5.1
58
84
4
332
35
8
14
41
1.75
6728--6801
22
3.1
23
65
24
62
29
6
12
51
1.65
6845--6959
39
3.0
39
84
1
142
35
2
11
50
1.52
6888--7138
96
2.6
98
81
7
280
40
7
12
39
1.72
7084--7175
39
2.4
39
84
0
112
43
6
15
34
1.72
7149--7202
26
2.1
26
89
0
81
37
9
14
38
1.79
7232--7314
39
2.1
39
86
0
112
31
8
14
45
1.74
11151--11226
26
2.8
27
84
5
100
11
18
30
39
1.87
11155--11225
28
2.7
26
86
4
88
12
16
30
39
1.86
14181--14218
20
2.0
20
89
5
60
34
10
18
36
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14872--14949
26
2.9
26
87
7
111
14
19
29
37
1.91
14876--14950
28
2.8
28
89
4
109
16
18
29
36
1.92
15898--15935
3
12.7
3
94
0
67
2
34
0
63
1.09
17499--17605
32
3.4
31
79
3
115
31
18
17
31
1.95
21249--21405
64
2.5
64
78
12
155
33
19
18
28
1.96
22293--22416
31
4.0
31
77
11
119
30
19
19
30
1.96
25467--25498
3
10.7
3
93
0
55
3
34
0
62
1.11
27077--27182
31
3.4
31
78
13
110
30
19
17
32
1.96
27077--27200
63
2.0
61
83
10
153
30
18
18
32
1.95
27193--27259
30
2.2
30
83
0
80
19
17
29
32
1.95
33831--33953
16
7.8
16
78
13
73
51
2
5
40
1.39
33529--33931
2
204.0
2
71
18
224
47
2
6
43
1.44
34446--34473
2
14.0
2
100
0
56
50
0
0
50
1.00
34663--34731
27
2.8
23
85
12
77
50
1
2
44
1.25
34828--34869
19
2.2
19
91
0
66
45
28
0
26
1.54
36359--36388
2
15.0
2
100
0
60
50
0
0
50
1.00
52857--52881
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!