Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004261.1 Hibiscus syriacus cultivar Beakdansim tig00009336_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87989

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2836--2882
10
4.6
10
75
15
51
59
21
4
14
1.52
4411--4459
11
4.5
11
82
5
64
59
18
4
18
1.53
4411--4459
21
2.3
22
92
3
82
59
18
4
18
1.53
5998--6046
11
4.5
11
82
5
64
61
18
2
18
1.45
10738--10834
39
2.5
39
94
1
169
20
17
14
47
1.82
11196--11258
29
2.2
29
83
11
76
19
6
4
69
1.28
17539--17852
53
5.9
53
84
1
380
22
26
21
29
1.99
18229--18357
42
3.1
41
85
1
159
31
22
19
26
1.98
18347--18532
93
2.0
93
90
0
291
29
22
17
31
1.97
18492--18559
22
3.2
22
69
23
63
36
20
16
26
1.93
18500--18566
22
3.1
22
70
23
70
35
20
14
28
1.93
23258--23292
8
4.1
8
92
7
52
0
22
0
77
0.78
23258--23292
13
2.7
13
83
16
54
0
22
0
77
0.78
45939--46018
25
3.3
23
70
17
56
41
11
1
46
1.48
49926--49962
3
12.7
3
88
5
58
35
0
0
64
0.94
51207--51243
3
12.3
3
100
0
74
32
0
0
67
0.91
55627--55689
24
2.6
25
78
14
78
57
0
1
41
1.08
55630--55689
21
2.7
22
79
18
70
56
0
1
41
1.09
55856--55922
35
1.9
35
90
0
107
19
17
17
44
1.87
55919--56101
94
2.0
93
88
1
276
29
17
17
35
1.93
56072--56143
36
2.0
36
97
0
135
22
18
16
43
1.88
55978--56234
131
2.0
130
90
0
406
26
16
17
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57638--57675
18
2.1
18
85
9
51
55
2
0
42
1.14
77061--77117
28
2.0
28
93
0
96
22
33
3
40
1.71
77068--77127
28
2.1
28
81
6
68
26
31
1
40
1.66
77794--77837
21
2.2
20
91
4
70
45
18
13
22
1.84
81528--81792
81
3.3
81
88
3
390
35
14
21
29
1.93
83117--83155
20
2.0
20
90
10
62
25
5
5
64
1.35
84054--84109
19
2.8
20
91
2
87
39
12
7
41
1.70
85871--85910
20
2.0
20
90
0
62
15
25
37
22
1.93

Tables:   1

The End!